Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 21total RNA-seq
  • 16WGBS
  • 13ATAC-seq
  • 13ChIP-seq
  • 12single cell RNA-seq
  • 1Hi-C
Assay category
  • 33Transcription
  • 16DNA methylation
  • 13DNA accessibility
  • 13DNA binding
  • 13D chromatin structure
Target of assay
  • 7histone
  • 7histone modification
  • 6control
  • 4narrow histone mark
  • 3broad histone mark
Date released
  • 19May, 2022
  • 14August, 2017
  • 14September, 2018
  • 10February, 2023
  • 9July, 2018
  • 3April, 2018
  • 2August, 2020
  • 2September, 2017
  • 2September, 2020
  • 1October, 2022
Available data
  • 56fastq
  • 42bam
  • 39bigWig
  • 22tsv
  • 19zippedFastqFolder
  • 14bed narrowPeak
  • 7bigBed narrowPeak
  • 1bedpe bed3+
  • 1cool
  • 1hic
Organism
  • 76Homo sapiens
Biosample type
  • 76primary cell
Organ
  • 76epithelium
  • 76pancreas
Project
  • 42AMP
  • 34HPAP
Genome assembly (visualization)
  • 39GRCh38
  • 37hg19
Lab
  • 42AMP-T2D consortium
  • 34Klaus Kaestner, Upenn
Audit category:
  • 1audit script error
Audit category:
  • 2inconsistent control read length
files.platform.term_name!
  • HiSeq HighOutput V4
BIOSAMPLE
ASSAY

76 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
WGBS
ATAC-seq
ChIP-seq
single cell RNA-seq
Hi-C
primary cell
pancreatic beta cell21161313121
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego