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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 19ATAC-seq
  • 16WGBS
  • 13ChIP-seq
  • 11total RNA-seq
  • 10single cell RNA-seq
  • 1Hi-C
Assay category
  • 21Transcription
  • 19DNA accessibility
  • 16DNA methylation
  • 13DNA binding
  • 13D chromatin structure
Target of assay
  • 7histone
  • 7histone modification
  • 6control
  • 4narrow histone mark
  • 3broad histone mark
Date released
  • 29May, 2022
  • 14August, 2017
  • 10February, 2023
  • 7July, 2018
  • 3April, 2018
  • 2August, 2020
  • 2September, 2017
  • 2September, 2020
  • 1October, 2022
Available data
  • 40fastq
  • 29zippedFastqFolder
  • 26bam
  • 23bigWig
  • 10bed narrowPeak
  • 10tsv
  • 3bigBed narrowPeak
  • 1bedpe bed3+
  • 1cool
  • 1hic
Organism
  • 70Homo sapiens
Biosample type
  • 70primary cell
Organ
  • 70epithelium
  • 70pancreas
Project
  • 44HPAP
  • 26AMP
Genome assembly (visualization)
  • 23GRCh38
  • 21hg19
Lab
  • 44Klaus Kaestner, Upenn
  • 26AMP-T2D consortium
Audit category:
  • 1audit script error
Audit category:
  • 2inconsistent control read length
files.platform.term_name!
  • Illumina HiSeq 2000
BIOSAMPLE
ASSAY

70 results

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ATAC-seq
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primary cell
pancreatic beta cell19161311101
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