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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
ATAC-seq
13
ChIP-seq
12
single cell RNA-seq
1
Hi-C
1
total RNA-seq
Assay category
23
DNA accessibility
13
DNA binding
13
Transcription
1
3D chromatin structure
Target of assay
7
histone
7
histone modification
6
control
4
narrow histone mark
3
broad histone mark
Date released
14
August, 2017
13
May, 2022
9
July, 2018
4
September, 2018
3
April, 2018
2
August, 2020
2
September, 2017
2
September, 2020
1
October, 2022
Available data
36
fastq
32
bam
29
bigWig
14
bed narrowPeak
13
zippedFastqFolder
12
tsv
7
bigBed narrowPeak
1
bedpe bed3+
1
cool
1
hic
Organism
50
Homo sapiens
Biosample type
50
primary cell
Organ
50
epithelium
50
pancreas
Project
32
AMP
18
HPAP
Genome assembly (visualization)
29
GRCh38
27
hg19
Lab
32
AMP-T2D consortium
18
Klaus Kaestner, Upenn
Audit category:
1
audit script error
Audit category:
2
inconsistent control read length
files.read_length!
101
BIOSAMPLE
ASSAY
50 results
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ATAC-seq
ChIP-seq
single cell RNA-seq
Hi-C
total RNA-seq
primary cell
pancreatic beta cell
23
13
12
1
1
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