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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
21
total RNA-seq
19
ATAC-seq
16
WGBS
13
ChIP-seq
12
single cell RNA-seq
1
Hi-C
Assay category
33
Transcription
19
DNA accessibility
16
DNA methylation
13
DNA binding
1
3D chromatin structure
Target of assay
7
histone
7
histone modification
6
control
4
narrow histone mark
3
broad histone mark
Date released
29
May, 2022
14
August, 2017
10
February, 2023
10
September, 2018
9
July, 2018
3
April, 2018
2
August, 2020
2
September, 2017
2
September, 2020
1
October, 2022
Available data
52
fastq
38
bam
35
bigWig
29
zippedFastqFolder
22
tsv
10
bed narrowPeak
3
bigBed narrowPeak
1
bedpe bed3+
1
cool
1
hic
Organism
82
Homo sapiens
Biosample type
82
primary cell
Organ
82
epithelium
82
pancreas
Project
44
HPAP
38
AMP
Genome assembly (visualization)
35
GRCh38
33
hg19
Lab
44
Klaus Kaestner, Upenn
38
AMP-T2D consortium
Audit category:
1
audit script error
Audit category:
2
inconsistent control read length
files.read_length!
102
BIOSAMPLE
ASSAY
82 results
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total RNA-seq
ATAC-seq
WGBS
ChIP-seq
single cell RNA-seq
Hi-C
primary cell
pancreatic beta cell
21
19
16
13
12
1
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