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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
ATAC-seq
21
total RNA-seq
16
WGBS
12
single cell RNA-seq
2
ChIP-seq
1
Hi-C
Assay category
33
Transcription
23
DNA accessibility
16
DNA methylation
2
DNA binding
1
3D chromatin structure
Target of assay
2
histone
2
histone modification
2
narrow histone mark
Date released
29
May, 2022
14
September, 2018
10
February, 2023
9
July, 2018
3
April, 2018
3
August, 2017
2
August, 2020
2
September, 2017
2
September, 2020
1
October, 2022
Available data
45
fastq
34
bigWig
31
bam
29
zippedFastqFolder
22
tsv
9
bed narrowPeak
7
bigBed narrowPeak
1
bedpe bed3+
1
cool
1
hic
Organism
75
Homo sapiens
Biosample type
75
primary cell
Organ
75
epithelium
75
pancreas
Project
44
HPAP
31
AMP
Genome assembly (visualization)
34
GRCh38
32
hg19
Lab
44
Klaus Kaestner, Upenn
31
AMP-T2D consortium
Audit category:
1
audit script error
Audit category:
2
inconsistent control read length
files.read_length!
36
BIOSAMPLE
ASSAY
75 results
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ATAC-seq
total RNA-seq
WGBS
single cell RNA-seq
ChIP-seq
Hi-C
primary cell
pancreatic beta cell
23
21
16
12
2
1
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