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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
ATAC-seq
21
total RNA-seq
16
WGBS
12
single cell RNA-seq
11
ChIP-seq
1
Hi-C
Assay category
33
Transcription
23
DNA accessibility
16
DNA methylation
11
DNA binding
1
3D chromatin structure
Target of assay
6
control
5
histone
5
histone modification
3
broad histone mark
2
narrow histone mark
Date released
29
May, 2022
14
September, 2018
12
August, 2017
10
February, 2023
9
July, 2018
3
April, 2018
2
August, 2020
2
September, 2017
2
September, 2020
1
October, 2022
Available data
54
fastq
40
bam
37
bigWig
29
zippedFastqFolder
22
tsv
12
bed narrowPeak
7
bigBed narrowPeak
1
bedpe bed3+
1
cool
1
hic
Organism
84
Homo sapiens
Biosample type
84
primary cell
Organ
84
epithelium
84
pancreas
Project
44
HPAP
40
AMP
Genome assembly (visualization)
37
GRCh38
35
hg19
Lab
44
Klaus Kaestner, Upenn
40
AMP-T2D consortium
Audit category:
1
audit script error
files.read_length!
44
BIOSAMPLE
ASSAY
84 results
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ATAC-seq
total RNA-seq
WGBS
single cell RNA-seq
ChIP-seq
Hi-C
primary cell
pancreatic beta cell
23
21
16
12
11
1
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