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Schema
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
21
total RNA-seq
16
WGBS
13
ChIP-seq
12
single cell RNA-seq
7
ATAC-seq
1
Hi-C
Assay category
33
Transcription
16
DNA methylation
13
DNA binding
7
DNA accessibility
1
3D chromatin structure
Target of assay
7
histone
7
histone modification
6
control
4
narrow histone mark
3
broad histone mark
Date released
16
May, 2022
14
September, 2018
13
August, 2017
10
February, 2023
9
July, 2018
3
April, 2018
2
August, 2020
2
September, 2020
1
October, 2022
Available data
53
fastq
39
bam
36
bigWig
22
tsv
16
zippedFastqFolder
11
bed narrowPeak
4
bigBed narrowPeak
1
bedpe bed3+
1
cool
1
hic
Organism
70
Homo sapiens
Biosample type
70
primary cell
Organ
70
epithelium
70
pancreas
Project
39
AMP
31
HPAP
Genome assembly (visualization)
36
GRCh38
34
hg19
Lab
39
AMP-T2D consortium
31
Klaus Kaestner, Upenn
Audit category:
1
audit script error
Audit category:
2
inconsistent control read length
files.read_length!
50
BIOSAMPLE
ASSAY
70 results
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total RNA-seq
WGBS
ChIP-seq
single cell RNA-seq
ATAC-seq
Hi-C
primary cell
pancreatic beta cell
21
16
13
12
7
1
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