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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
ATAC-seq
21
total RNA-seq
16
WGBS
12
ChIP-seq
12
single cell RNA-seq
1
Hi-C
Assay category
33
Transcription
23
DNA accessibility
16
DNA methylation
12
DNA binding
1
3D chromatin structure
Target of assay
7
histone
7
histone modification
5
control
4
narrow histone mark
3
broad histone mark
Date released
29
May, 2022
14
September, 2018
13
August, 2017
10
February, 2023
9
July, 2018
3
April, 2018
2
August, 2020
2
September, 2017
2
September, 2020
1
October, 2022
Available data
55
fastq
41
bam
39
bigWig
29
zippedFastqFolder
22
tsv
14
bed narrowPeak
7
bigBed narrowPeak
1
bedpe bed3+
1
cool
1
hic
Organism
85
Homo sapiens
Biosample type
85
primary cell
Organ
85
epithelium
85
pancreas
Project
44
HPAP
41
AMP
Genome assembly (visualization)
39
GRCh38
37
hg19
Lab
44
Klaus Kaestner, Upenn
41
AMP-T2D consortium
Audit category:
1
audit script error
Audit category:
2
inconsistent control read length
lab.title!
Katalin Susztak, Upenn
month_released!
May, 2020
replication_type!
isogenic
BIOSAMPLE
ASSAY
85 results
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ATAC-seq
total RNA-seq
WGBS
ChIP-seq
single cell RNA-seq
Hi-C
primary cell
pancreatic beta cell
23
21
16
12
12
1
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