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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
203
DNase-seq
21
ChIP-seq
Assay category
203
DNA accessibility
21
DNA binding
Target of assay
16
histone
16
histone modification
8
broad histone mark
8
narrow histone mark
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
186
June, 2019
15
August, 2017
8
November, 2018
8
October, 2019
6
November, 2017
1
November, 2020
Available data
2295
bam
2150
bigWig
1354
bed narrowPeak
1054
tsv
813
fastq
663
bigBed narrowPeak
370
tagAlign
264
bed bed3+
259
bed broadPeak
224
bigBed broadPeak
160
txt
153
zippedFastqFolder
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
21
hic
20
bedpe bed3+
11
bed bed3
7
bed bedgraph
7
csv
4
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
tar
Organism
224
Homo sapiens
Biosample type
174
tissue
cell line
49
primary cell
1
in vitro differentiated cells
Organ
78
kidney
38
brain
36
limb
33
musculature of body
30
heart
22
epithelium
18
ureter
17
vasculature
13
blood vessel
9
connective tissue
6
pancreas
5
liver
4
artery
4
eye
4
vein
adipose tissue
2
nerve
1
spleen
Project
224
AMP
Genome assembly (visualization)
220
GRCh38
201
hg19
Lab
224
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
1
inconsistent assembly
biosample_type!
cell line
lab.title!
Mark McCarthy, Oxford
month_released!
September, 2018
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
224 results
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Clear Filters
DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 38 more…
primary cell
skeletal muscle myoblast
1
13
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
+ See 18 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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