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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
175
total RNA-seq
159
ChIP-seq
22
ATAC-seq
4
WGBS
3
small RNA-seq
2
Hi-C
1
DNase-seq
1
pCHi-C
1
single cell RNA-seq
Assay category
179
Transcription
159
DNA binding
23
DNA accessibility
4
DNA methylation
2
3D chromatin structure
Target of assay
73
histone modification
72
histone
47
control
46
narrow histone mark
39
transcription factor
26
broad histone mark
2
RNA binding protein
2
chromatin remodeller
Date released
193
May, 2020
53
August, 2017
48
December, 2017
40
May, 2022
9
July, 2019
7
October, 2019
5
December, 2019
4
August, 2021
4
November, 2018
3
March, 2020
1
February, 2020
1
February, 2021
Available data
300
bam
276
bigWig
159
tsv
119
bed narrowPeak
83
fastq
74
tagAlign
51
bigBed narrowPeak
12
bed bed3+
bed broadPeak
5
bigBed broadPeak
2
bed bedMethyl
bigBed bedMethyl
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
368
Homo sapiens
Biosample type
357
tissue
cell line
in vitro differentiated cells
11
primary cell
Organ
825
pancreas
575
connective tissue
485
adipose tissue
393
epithelium
368
liver
288
heart
253
kidney
237
brain
159
bone element
151
vasculature
150
blood vessel
85
limb
71
artery
56
eye
46
musculature of body
41
nerve
22
spleen
20
lung
18
vein
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
368
AMP
Genome assembly (visualization)
274
hg19
244
GRCh38
Lab
328
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
inconsistent ontology term
Audit category:
1
inconsistent control read length
biosample_type!
cell line
in vitro differentiated cells
files.file_type!
bed broadPeak
bigBed bedMethyl
BIOSAMPLE
ASSAY
368 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
Hi-C
DNase-seq
pCHi-C
single cell RNA-seq
tissue
liver
167
145
20
3
1
1
1
1
right lobe of liver
3
10
1
1
2
1
primary cell
hepatocyte
5
4
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
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