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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
225
ChIP-seq
89
total RNA-seq
9
WGBS
6
RRBS
5
ATAC-seq
4
DNase-seq
1
FAIRE-seq
Assay category
225
DNA binding
89
Transcription
15
DNA methylation
10
DNA accessibility
Target of assay
162
histone modification
161
histone
89
broad histone mark
72
narrow histone mark
42
control
25
transcription factor
RNA binding protein
1
chromatin remodeller
Date released
593
February, 2021
340
May, 2020
339
August, 2017
276
October, 2019
246
May, 2021
233
August, 2021
214
June, 2019
200
May, 2022
183
February, 2023
168
July, 2018
115
May, 2019
108
July, 2019
88
November, 2017
76
April, 2019
73
September, 2018
65
October, 2018
59
September, 2020
49
April, 2018
49
December, 2017
47
September, 2023
45
March, 2020
40
November, 2019
35
May, 2024
25
February, 2020
24
November, 2018
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
November, 2020
8
December, 2019
7
August, 2020
7
December, 2018
7
January, 2019
5
March, 2019
3
August, 2018
3
January, 2018
3
June, 2018
3
March, 2023
3
October, 2022
1
August, 2022
Available data
229
fastq
224
bam
220
bigWig
96
bed narrowPeak
89
tsv
71
tagAlign
39
bigBed narrowPeak
38
bed broadPeak
24
bed bed3+
12
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
332
Homo sapiens
Biosample type
282
tissue
in vitro differentiated cells
57
primary cell
Organ
186
pancreas
57
adipose tissue
57
connective tissue
54
liver
29
epithelium
26
musculature of body
Project
339
AMP
Genome assembly (visualization)
223
hg19
197
GRCh38
Lab
339
AMP-T2D consortium
Audit category:
33
missing controlled_by
Audit category:
10
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
biosample_type!
cell line
in vitro differentiated cells
target.investigated_as!
RNA binding protein
other context
BIOSAMPLE
ASSAY
339 results
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ChIP-seq
total RNA-seq
WGBS
RRBS
ATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
40
89
1
1
liver
48
3
1
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
4
pancreas
14
+ See 4 more…
primary cell
skeletal muscle myoblast
13
1
2
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic endocrine cell
12
pancreatic acinar cell
1
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