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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
911
total RNA-seq
859
ChIP-seq
178
DNase-seq
81
ATAC-seq
17
WGBS
16
small RNA-seq
6
single cell RNA-seq
4
FAIRE-seq
Assay category
933
Transcription
859
DNA binding
263
DNA accessibility
17
DNA methylation
Target of assay
546
histone modification
545
histone
284
narrow histone mark
260
broad histone mark
191
control
122
transcription factor
29
RNA binding protein
5
chromatin remodeller
3
other context
3
other post-translational modification
Date released
474
February, 2021
224
August, 2017
193
May, 2020
190
October, 2019
163
June, 2019
May, 2021
116
July, 2018
115
May, 2019
94
December, 2017
79
April, 2019
74
October, 2018
69
November, 2017
64
July, 2019
44
November, 2019
39
February, 2018
37
August, 2021
26
November, 2018
24
May, 2022
15
October, 2017
11
March, 2020
7
December, 2018
7
January, 2019
6
April, 2018
September, 2017
1
March, 2019
Available data
2072
bam
1907
bigWig
1113
bed narrowPeak
1094
tsv
578
bigBed narrowPeak
516
fastq
272
tagAlign
231
bed bed3+
214
bed broadPeak
177
bigBed broadPeak
160
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
17
bedpe bed3+
15
hic
10
bed bed3
7
bed bedgraph
6
csv
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
2065
Homo sapiens
Biosample type
1863
tissue
cell line
primary cell
206
in vitro differentiated cells
3
stem cell
Organ
556
connective tissue
440
adipose tissue
387
pancreas
303
liver
226
brain
130
heart
114
limb
98
kidney
87
blood vessel
87
vasculature
66
bone element
44
musculature of body
42
nerve
34
artery
26
embryo
24
spleen
19
epithelium
18
ureter
8
skeleton
3
eye
1
pituitary gland
Project
2070
AMP
2
T1D
Genome assembly (visualization)
1847
GRCh38
1791
hg19
Lab
2047
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
Audit category:
37
inconsistent ontology term
27
inconsistent control
Audit category:
31
missing controlled_by
Audit category:
25
inconsistent control read length
1
inconsistent assembly
biosample_type!
cell line
primary cell
month_released!
May, 2021
September, 2017
BIOSAMPLE
ASSAY
2072 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
single cell RNA-seq
FAIRE-seq
tissue
adipose tissue
381
2
2
islet of Langerhans
230
24
1
38
6
1
liver
147
122
2
1
bone tissue
58
body of pancreas
2
35
4
4
2
2
+ See 138 more…
in vitro differentiated cells
adipocyte
4
53
1
neural progenitor cell
7
20
10
pancreatic endoderm
4
18
cardiac precursors (cardiac muscle cell)
19
1
hepatocyte
15
+ See 11 more…
stem cell
hESC
3
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