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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1028
total RNA-seq
871
ChIP-seq
178
DNase-seq
73
ATAC-seq
17
WGBS
16
small RNA-seq
6
single cell RNA-seq
4
FAIRE-seq
Assay category
1050
Transcription
871
DNA binding
255
DNA accessibility
17
DNA methylation
Target of assay
547
histone modification
546
histone
285
narrow histone mark
260
broad histone mark
198
control
126
transcription factor
29
RNA binding protein
5
chromatin remodeller
3
other context
3
other post-translational modification
Date released
466
February, 2021
224
August, 2017
193
May, 2020
190
October, 2019
163
June, 2019
123
May, 2021
116
July, 2018
115
May, 2019
94
December, 2017
79
April, 2019
74
October, 2018
69
November, 2017
64
July, 2019
44
November, 2019
39
February, 2018
37
August, 2021
26
November, 2018
24
May, 2022
15
October, 2017
11
March, 2020
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
1
March, 2019
Available data
2193
bam
2034
bigWig
1211
tsv
1110
bed narrowPeak
578
bigBed narrowPeak
522
fastq
278
tagAlign
233
bed bed3+
214
bed broadPeak
177
bigBed broadPeak
156
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
17
bedpe bed3+
15
hic
7
bed bedgraph
6
bed bed3
6
csv
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
2186
Homo sapiens
Biosample type
1899
tissue
primary cell
cell line
291
in vitro differentiated cells
3
stem cell
Organ
557
connective tissue
440
adipose tissue
432
pancreas
303
liver
226
brain
133
heart
114
limb
98
kidney
87
blood vessel
87
vasculature
66
bone element
44
musculature of body
42
nerve
34
artery
28
embryo
24
epithelium
24
spleen
18
ureter
skeleton
3
eye
1
pituitary gland
Project
2191
AMP
2
T1D
Genome assembly (visualization)
1963
GRCh38
1907
hg19
Lab
2168
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
Audit category:
105
inconsistent ontology term
27
inconsistent control
Audit category:
31
missing controlled_by
Audit category:
25
inconsistent control read length
1
inconsistent assembly
biosample_type!
cell line
primary cell
organ_slims!
skeleton
skin of body
BIOSAMPLE
ASSAY
2193 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
single cell RNA-seq
FAIRE-seq
tissue
adipose tissue
381
2
2
islet of Langerhans
266
30
1
38
6
1
liver
147
122
2
1
bone tissue
58
body of pancreas
2
35
4
4
2
2
+ See 132 more…
in vitro differentiated cells
cardiomyocytes
59
3
adipocyte
4
53
1
neural progenitor cell
7
20
10
pancreatic endoderm
4
18
cardiac precursors (cardiac muscle cell)
19
1
+ See 24 more…
stem cell
hESC
3
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