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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
744
total RNA-seq
456
ChIP-seq
163
DNase-seq
43
ATAC-seq
14
small RNA-seq
8
WGBS
2
FAIRE-seq
Assay category
758
Transcription
456
DNA binding
208
DNA accessibility
8
DNA methylation
Target of assay
439
histone
439
histone modification
236
narrow histone mark
203
broad histone mark
17
transcription factor
12
RNA binding protein
Date released
466
February, 2021
170
May, 2020
164
October, 2019
159
June, 2019
92
May, 2019
89
May, 2021
65
April, 2019
59
July, 2019
57
November, 2017
40
May, 2024
22
August, 2021
20
May, 2022
14
August, 2017
8
March, 2020
3
February, 2023
2
January, 2018
Available data
1769
bam
1659
bigWig
993
bed narrowPeak
936
tsv
516
bigBed narrowPeak
fastq
259
tagAlign
206
bed bed3+
194
bed broadPeak
171
bigBed broadPeak
154
txt
64
xls
19
bed bedMethyl
19
bigBed bedMethyl
14
bedpe bed3+
12
hic
10
bed bed3
7
bed bedgraph
6
csv
2
ibed
1
tagAlign bed3+
Organism
1430
Homo sapiens
Biosample type
1290
tissue
primary cell
140
in vitro differentiated cells
cell line
Organ
467
connective tissue
400
adipose tissue
pancreas
204
liver
193
brain
158
heart
91
kidney
91
limb
70
blood vessel
70
vasculature
58
bone element
57
musculature of body
31
nerve
27
artery
18
ureter
4
epithelium
3
eye
2
embryo
1
pituitary gland
Project
1430
AMP
Genome assembly (visualization)
1368
GRCh38
1315
hg19
Lab
1360
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
5
Kyle Gaulton, UCSD
5
Struan F.A. Grant, CHOP
Audit category:
94
inconsistent ontology term
biosample_type!
cell line
primary cell
files.file_type!
fastq
organ_slims!
pancreas
BIOSAMPLE
ASSAY
1430 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
WGBS
FAIRE-seq
tissue
adipose tissue
381
2
liver
147
32
20
1
bone tissue
58
left cardiac atrium
40
1
heart left ventricle
3
29
3
2
2
+ See 126 more…
in vitro differentiated cells
cardiomyocytes
59
3
neural progenitor cell
7
13
cardiac precursors (cardiac muscle cell)
19
induced pluripotent stem cell
9
adipocyte
4
3
+ See 16 more…
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