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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
334
ChIP-seq
112
total RNA-seq
27
ATAC-seq
10
WGBS
6
single cell RNA-seq
5
GRO-seq
3
RRBS
2
FAIRE-seq
1
DNase-seq
1
pCHi-C
Assay category
334
DNA binding
118
Transcription
30
DNA accessibility
13
DNA methylation
Target of assay
132
histone modification
131
histone
112
transcription factor
90
control
71
broad histone mark
59
narrow histone mark
21
RNA binding protein
5
chromatin remodeller
3
other context
3
other post-translational modification
Date released
222
August, 2017
94
December, 2017
58
October, 2018
39
February, 2018
24
May, 2022
17
November, 2018
13
October, 2017
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
January, 2018
2
July, 2018
1
August, 2018
Available data
2201
bam
2034
bigWig
1211
tsv
1118
bed narrowPeak
578
bigBed narrowPeak
522
fastq
278
tagAlign
233
bed bed3+
bed broadPeak
177
bigBed broadPeak
160
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
17
bedpe bed3+
15
hic
10
bed bed3
7
bed bedgraph
6
csv
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
500
Homo sapiens
Biosample type
cell line
357
tissue
primary cell
140
in vitro differentiated cells
4
stem cell
Organ
203
pancreas
96
connective tissue
95
liver
43
adipose tissue
27
embryo
23
spleen
19
epithelium
7
brain
2
musculature of body
Project
501
AMP
Genome assembly (visualization)
395
hg19
381
GRCh38
5
hg18
Lab
477
AMP-T2D consortium
24
Kyle Gaulton, UCSD
Audit category:
27
inconsistent control
4
inconsistent ontology term
Audit category:
30
missing controlled_by
Audit category:
25
inconsistent control read length
biosample_type!
cell line
primary cell
files.file_type!
bed broadPeak
lab.title!
Klaus Kaestner, Upenn
BIOSAMPLE
ASSAY
501 results
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ChIP-seq
total RNA-seq
ATAC-seq
WGBS
single cell RNA-seq
GRO-seq
RRBS
FAIRE-seq
DNase-seq
pCHi-C
tissue
islet of Langerhans
28
97
18
6
1
1
liver
67
1
1
body of pancreas
33
4
2
spleen
20
1
2
pancreas
10
2
1
+ See 8 more…
in vitro differentiated cells
adipocyte
53
pancreatic endoderm
18
4
1
hepatocyte
15
definitive endodermal cell
8
2
1
primitive gut cell
8
2
1
+ See 7 more…
stem cell
hESC
3
1
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