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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
total RNA-seq
13
single cell RNA-seq
3
ATAC-seq
1
snATAC-seq
Assay category
68
Transcription
4
DNA accessibility
Date released
57
August, 2021
7
May, 2022
5
February, 2021
3
February, 2023
Available data
2135
bam
1976
bigWig
1153
tsv
1110
bed narrowPeak
578
bigBed narrowPeak
522
fastq
278
tagAlign
233
bed bed3+
214
bed broadPeak
177
bigBed broadPeak
72
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
17
bedpe bed3+
15
hic
7
bed bedgraph
6
bed bed3
6
csv
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
72
Homo sapiens
Biosample type
69
tissue
3
in vitro differentiated cells
cell line
Organ
bone element
62
kidney
6
pancreas
4
skeleton
1
musculature of body
Project
72
AMP
Genome assembly (visualization)
4
hg19
Lab
57
Katalin Susztak, Upenn
6
AMP-T2D consortium
6
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
6
audit script error
1
inconsistent ontology term
biosample_type!
cell line
primary cell
organ_slims!
bone element
BIOSAMPLE
ASSAY
72 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
tissue
kidney
49
13
islet of Langerhans
6
skeletal muscle tissue
1
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
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