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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
464
total RNA-seq
24
ChIP-seq
22
ATAC-seq
3
pCHi-C
2
Capture-C
2
DNase-seq
2
small RNA-seq
1
RNA microarray
Assay category
466
Transcription
24
DNA accessibility
24
DNA binding
Target of assay
18
control
5
RNA binding protein
5
transcription factor
1
histone
1
histone modification
1
narrow histone mark
Date released
452
February, 2021
August, 2017
23
October, 2018
14
February, 2023
10
July, 2019
5
August, 2021
4
October, 2019
2
February, 2020
2
March, 2020
1
August, 2018
1
January, 2018
1
June, 2019
1
May, 2021
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
486
bam
473
bigWig
463
tsv
26
fastq
12
bed narrowPeak
10
bigBed narrowPeak
8
bed bed3+
5
bed bed3
4
bed bedgraph
2
bed broadPeak
2
bigBed broadPeak
1
bedpe bed3+
Organism
519
Homo sapiens
Biosample type
490
tissue
primary cell
29
in vitro differentiated cells
1
stem cell
Organ
520
connective tissue
432
adipose tissue
361
pancreas
322
liver
314
heart
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
73
artery
56
eye
56
musculature of body
43
nerve
39
epithelium
29
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
520
AMP
Genome assembly (visualization)
491
hg19
469
GRCh38
Lab
516
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
Audit category:
6
inconsistent ontology term
biosample_type!
cell line
primary cell
month_released!
August, 2017
BIOSAMPLE
ASSAY
520 results
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total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
Capture-C
DNase-seq
small RNA-seq
RNA microarray
tissue
adipose tissue
382
3
1
bone tissue
58
subcutaneous adipose tissue
7
12
1
1
omental fat pad
5
11
1
2
1
visceral abdominal adipose tissue
3
+ See 2 more…
in vitro differentiated cells
adipocyte
5
8
1
chondrocyte
5
immature adipocyte
2
2
osteoblast
1
1
preadipocyte
1
1
+ See 2 more…
stem cell
mesenchymal stem cell
1
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