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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
351
ChIP-seq
Assay category
351
DNA binding
Target of assay
351
histone
351
histone modification
179
broad histone mark
171
narrow histone mark
control
59
transcription factor
21
RNA binding protein
4
chromatin remodeller
Date released
139
May, 2021
75
August, 2017
32
September, 2018
26
December, 2017
21
October, 2019
19
June, 2019
17
August, 2021
16
February, 2018
3
May, 2019
3
November, 2017
Available data
310
bigWig
296
bed narrowPeak
284
bam
140
fastq
124
tagAlign
59
bigBed narrowPeak
16
bed broadPeak
16
bigBed broadPeak
13
bed bed3+
Organism
351
Homo sapiens
Biosample type
tissue
237
primary cell
112
in vitro differentiated cells
cell line
2
stem cell
Organ
81
epithelium
59
pancreas
45
connective tissue
17
vasculature
16
blood vessel
15
liver
15
vein
12
embryo
10
kidney
8
musculature of body
3
brain
2
heart
1
eye
Project
267
AMP
84
T1D
Genome assembly (visualization)
309
hg19
278
GRCh38
Lab
217
AMP-T2D consortium
134
Kyle Gaulton, UCSD
Audit category:
19
inconsistent ontology term
Audit category:
45
missing controlled_by
Audit category:
14
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
biosample_type!
cell line
tissue
files.file_type!
bed bedMethyl
target.investigated_as!
control
BIOSAMPLE
ASSAY
351 results
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Clear Filters
ChIP-seq
primary cell
monocyte
85
CD8-positive, alpha-beta T cell
30
pancreatic endocrine cell
23
endothelial cell of umbilical vein
15
pancreatic ductal cell
13
+ See 18 more…
in vitro differentiated cells
adipocyte
37
embryonic stem cell
22
neural progenitor cell
14
hepatocyte
12
pancreatic endoderm
10
+ See 7 more…
stem cell
hESC
2
See all biosamples
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