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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
ChIP-seq
Assay category
59
DNA binding
Target of assay
351
histone
351
histone modification
179
broad histone mark
171
narrow histone mark
70
control
59
transcription factor
21
RNA binding protein
4
chromatin remodeller
Date released
24
August, 2017
16
May, 2021
11
December, 2017
4
June, 2019
3
November, 2017
1
May, 2019
Available data
47
bam
47
bigWig
42
bed narrowPeak
38
fastq
12
bigBed narrowPeak
6
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
4
tagAlign
Organism
59
Homo sapiens
Biosample type
cell line
tissue
49
in vitro differentiated cells
10
primary cell
Organ
23
connective tissue
8
epithelium
3
brain
3
embryo
2
kidney
2
liver
2
vasculature
1
blood vessel
1
eye
1
heart
1
pancreas
Project
59
AMP
Genome assembly (visualization)
47
hg19
46
GRCh38
Lab
47
AMP-T2D consortium
12
Kyle Gaulton, UCSD
Audit category:
6
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
10
inconsistent control read length
biosample_type!
cell line
tissue
files.file_type!
tsv
BIOSAMPLE
ASSAY
59 results
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ChIP-seq
in vitro differentiated cells
adipocyte
22
embryonic stem cell
12
cardiomyocytes
3
pancreatic endoderm
3
Posterior foregut
2
+ See 4 more…
primary cell
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
cardiac fibroblast
1
cardiac muscle cell
1
+ See 4 more…
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