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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
21
ChIP-seq
5
DNase-seq
Assay category
21
DNA binding
5
DNA accessibility
Target of assay
16
histone
16
histone modification
8
broad histone mark
8
narrow histone mark
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
June, 2019
15
August, 2017
6
November, 2017
4
October, 2019
1
November, 2020
Available data
848
bam
828
bigWig
554
fastq
405
tsv
382
bed narrowPeak
153
zippedFastqFolder
140
tagAlign
79
bigBed narrowPeak
41
bed bed3+
26
bed broadPeak
26
bigBed broadPeak
bedpe bed3+
10
bed bedMethyl
10
bigBed bedMethyl
10
hic
7
bed bedgraph
6
bed bed3
4
hdf5
3
cool
3
txt
2
csv
2
ibed
1
tar
Organism
26
Homo sapiens
Biosample type
cell line
tissue
25
primary cell
1
in vitro differentiated cells
Organ
8
epithelium
8
vasculature
6
blood vessel
6
brain
4
vein
2
connective tissue
Project
26
AMP
Genome assembly (visualization)
26
hg19
22
GRCh38
Lab
26
AMP-T2D consortium
Audit category:
1
inconsistent assembly
biosample_type!
cell line
tissue
files.file_type!
bedpe bed3+
month_released!
June, 2019
BIOSAMPLE
ASSAY
26 results
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ChIP-seq
DNase-seq
primary cell
skeletal muscle myoblast
13
1
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
+ See 1 more…
in vitro differentiated cells
adipocyte
1
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