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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
DNase-seq
19
ChIP-seq
Assay category
27
DNA accessibility
19
DNA binding
Target of assay
14
histone
14
histone modification
8
narrow histone mark
6
broad histone mark
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
24
June, 2019
15
August, 2017
6
November, 2017
October, 2019
1
November, 2020
Available data
868
bam
848
bigWig
554
fastq
406
bed narrowPeak
401
tsv
153
zippedFastqFolder
140
tagAlign
111
bigBed narrowPeak
63
bed bed3+
46
bed broadPeak
46
bigBed broadPeak
10
bed bedMethyl
10
bigBed bedMethyl
bedpe bed3+
7
bed bedgraph
7
hic
6
bed bed3
4
hdf5
3
cool
3
txt
2
csv
2
ibed
Organism
46
Homo sapiens
Biosample type
tissue
cell line
45
primary cell
1
in vitro differentiated cells
Organ
18
epithelium
11
brain
10
kidney
8
vasculature
7
connective tissue
4
blood vessel
3
heart
2
liver
1
eye
1
musculature of body
Project
46
AMP
Genome assembly (visualization)
44
GRCh38
39
hg19
Lab
46
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
1
inconsistent assembly
biosample_type!
cell line
tissue
files.file_type!
bedpe bed3+
month_released!
October, 2019
BIOSAMPLE
ASSAY
46 results
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DNase-seq
ChIP-seq
primary cell
skeletal muscle myoblast
1
13
astrocyte of the cerebellum
1
2
brain microvascular endothelial cell
1
2
cardiac fibroblast
3
choroid plexus epithelial cell
1
2
+ See 17 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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