Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
507
accessible chromatin
471
gene expression
407
candidate regulatory elements
349
target gene predictions
237
chromatin state
190
histone modifications
152
differential activity
138
binding sites
88
variant allelic effects
43
eQTL
11
caQTL
1
other
1
representative DNase hypersensitivity sites
Date released
645
February, 2021
592
September, 2022
333
November, 2021
May, 2021
286
September, 2023
184
February, 2024
93
May, 2020
74
June, 2020
73
August, 2021
January, 2021
55
March, 2023
40
January, 2022
40
May, 2022
31
October, 2022
27
November, 2022
26
January, 2020
19
April, 2020
17
March, 2020
16
February, 2020
11
August, 2017
9
August, 2018
9
October, 2019
5
February, 2023
3
November, 2019
3
November, 2020
2
May, 2024
July, 2020
1
June, 2021
1
March, 2024
Available data
1691
bed bed3+
585
tsv
381
bigWig
199
bed bed9
108
txt
27
bed bed9+
24
csv
16
bigBed narrowPeak
4
bigBed bed9
3
bam
3
bed gappedPeak
3
xls
Organism
2549
Homo sapiens
Biosample type
tissue
cell line
2158
primary cell
431
in vitro differentiated cells
4
stem cell
Organ
806
epithelium
319
connective tissue
310
kidney
169
vasculature
112
blood vessel
105
skin of body
97
pancreas
68
liver
51
musculature of body
49
embryo
48
mammary gland
46
penis
43
extraembryonic component
40
brain
33
lung
30
heart
29
eye
28
artery
23
intestine
19
lymphatic vessel
19
vein
16
bronchus
12
bone element
11
adrenal gland
11
bone marrow
11
stomach
10
esophagus
10
placenta
9
blood
9
bodily fluid
9
prostate gland
6
large intestine
5
trachea
5
uterus
4
gonad
4
mouth
4
nose
4
small intestine
4
spinal cord
3
thyroid gland
2
adipose tissue
2
ovary
1
pericardium
1
testis
1
thymus
Project
1956
AMP
333
ENCODE
281
KPMP
19
LungMap
4
T1D
2
community
Genome assembly (visualization)
1926
hg19
675
GRCh38
biosample_type!
cell line
tissue
month_released!
January, 2021
July, 2020
May, 2021
BIOSAMPLE
TYPE
2595 results
search-icon
table-tab-icon
Clear Filters
accessible chromatin
gene expression
candidate regulatory elements
target gene predictions
chromatin state
histone modifications
differential activity
binding sites
variant allelic effects
eQTL
caQTL
other
representative DNase hypersensitivity sites
primary cell
common myeloid progenitor, CD34-positive
27
13
13
B cell
6
14
9
8
endothelial cell
14
8
6
1
2
2
1
2
CD4-positive, alpha-beta memory T cell
14
9
9
hepatocyte
8
12
1
2
1
4
1
2
+ See 436 more…
in vitro differentiated cells
neural progenitor cell
10
7
5
5
4
15
hematopoietic multipotent progenitor cell
1
19
10
10
1
1
adipocyte
4
1
4
2
6
1
1
cardiomyocytes
11
mesenchymal stem cell
1
3
2
2
1
1
+ See 110 more…
stem cell
H1-hESC
1
mesenchymal stem cell
1
mesendoderm
1
undifferentiated ESC (H9 cell line)
1
See all biosamples
Download