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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
13
ChIP-seq
6
Hi-C
5
RRBS
2
pCHi-C
2
total RNA-seq
1
ATAC-seq
1
single cell RNA-seq
1
snATAC-seq
Assay category
13
DNA binding
6
3D chromatin structure
5
DNA methylation
3
Transcription
2
DNA accessibility
Target of assay
10
histone
10
histone modification
6
narrow histone mark
4
broad histone mark
3
control
Date released
13
August, 2017
5
July, 2019
4
March, 2020
4
October, 2019
2
February, 2020
2
May, 2022
1
January, 2018
Available data
68
bigWig
60
bed narrowPeak
bam
47
bigBed narrowPeak
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
10
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
31
Homo sapiens
Biosample type
30
tissue
1
primary cell
Organ
221
pancreas
206
kidney
182
heart
179
epithelium
93
bone element
90
connective tissue
75
liver
54
eye
51
vasculature
50
blood vessel
48
adipose tissue
42
brain
39
artery
26
musculature of body
20
lung
8
blood
8
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
31
AMP
Genome assembly (visualization)
7
hg19
Lab
31
AMP-T2D consortium
Audit category:
1
audit script error
biosample_type!
cell line
files.file_type!
bam
bed broadPeak
BIOSAMPLE
ASSAY
31 results
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ChIP-seq
Hi-C
RRBS
pCHi-C
total RNA-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
9
4
1
1
1
gastrocnemius medialis
4
1
islet of Langerhans
4
psoas muscle
2
1
left ventricle myocardium
1
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primary cell
skeletal muscle cell
1
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