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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
69
ATAC-seq
69
total RNA-seq
47
WGBS
23
ChIP-seq
13
Hi-C
12
snATAC-seq
7
RRBS
4
MeRIP-seq
2
pCHi-C
1
single cell RNA-seq
Assay category
81
DNA accessibility
70
Transcription
54
DNA methylation
23
DNA binding
13
3D chromatin structure
Target of assay
14
histone
14
histone modification
11
control
8
broad histone mark
6
narrow histone mark
2
nucleotide modification
Date released
82
May, 2022
55
February, 2023
27
August, 2017
19
September, 2020
9
March, 2020
8
January, 2021
7
August, 2020
7
July, 2019
6
February, 2021
4
July, 2018
4
March, 2019
4
November, 2020
3
February, 2020
3
October, 2019
3
October, 2022
2
August, 2021
1
August, 2022
1
January, 2018
1
May, 2021
1
November, 2019
Available data
bam
635
bigWig
473
fastq
392
tsv
253
bed narrowPeak
131
bigBed narrowPeak
80
zippedFastqFolder
bed broadPeak
61
bed bed3+
39
bigBed broadPeak
34
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
8
bedpe bed3+
8
hic
7
txt
3
cool
1
bedpe
Organism
247
Homo sapiens
Biosample type
153
primary cell
94
tissue
cell line
Organ
221
pancreas
206
kidney
182
heart
179
epithelium
93
bone element
90
connective tissue
75
liver
54
eye
51
vasculature
50
blood vessel
48
adipose tissue
42
brain
39
artery
26
musculature of body
20
lung
8
blood
8
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
152
HPAP
67
AMP
28
T1D
Genome assembly (visualization)
19
hg19
12
GRCh38
Lab
152
Klaus Kaestner, Upenn
58
AMP-T2D consortium
27
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
5
audit script error
biosample_type!
cell line
files.file_type!
bam
bed broadPeak
BIOSAMPLE
ASSAY
247 results
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Clear Filters
ATAC-seq
total RNA-seq
WGBS
ChIP-seq
Hi-C
snATAC-seq
RRBS
MeRIP-seq
pCHi-C
single cell RNA-seq
primary cell
pancreatic alpha cell
29
42
31
1
pancreatic beta cell
16
11
16
1
pancreatic acinar cell
4
1
skeletal muscle cell
1
tissue
islet of Langerhans
19
12
14
3
7
1
4
skeletal muscle tissue
1
9
1
4
1
pancreas
1
1
4
1
1
gastrocnemius medialis
1
4
psoas muscle
2
1
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