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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
Hi-C
5
RRBS
3
ChIP-seq
2
total RNA-seq
1
ATAC-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
6
3D chromatin structure
5
DNA methylation
3
DNA binding
3
Transcription
2
DNA accessibility
Target of assay
6
histone
histone modification
4
broad histone mark
3
control
2
narrow histone mark
Date released
7
August, 2017
5
July, 2019
3
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
Available data
bam
41
bigWig
34
bed bed3+
bed broadPeak
33
bed narrowPeak
33
bigBed broadPeak
33
bigBed narrowPeak
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
2
tagAlign
1
txt
Organism
20
Homo sapiens
Biosample type
19
tissue
1
primary cell
Organ
213
pancreas
206
kidney
179
epithelium
146
heart
93
bone element
55
liver
52
eye
51
vasculature
50
blood vessel
47
connective tissue
39
artery
22
brain
20
lung
20
musculature of body
18
adipose tissue
8
blood
8
bodily fluid
8
skeleton
7
limb
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
gonad
1
large intestine
1
nerve
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
20
AMP
Genome assembly (visualization)
7
hg19
Lab
20
AMP-T2D consortium
Audit category:
1
audit script error
biosample_type!
cell line
files.file_type!
bam
bed broadPeak
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
20 results
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Hi-C
RRBS
ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
4
3
1
1
1
gastrocnemius medialis
4
1
psoas muscle
2
1
left ventricle myocardium
1
primary cell
skeletal muscle cell
1
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