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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 337ATAC-seq
  • 274ChIP-seq
  • 263single cell RNA-seq
  • 236total RNA-seq
  • 87RNA microarray
  • 84snATAC-seq
  • 57WGBS
  • 50pCHi-C
  • 30Hi-C
  • 21RRBS
  • 5GRO-seq
  • 4MeRIP-seq
  • 3DNase-seq
  • 3snDrop-seq
  • 2Capture-C
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1DNAme array
Assay category
  • 501Transcription
  • 424DNA accessibility
  • 274DNA binding
  • 79DNA methylation
  • 303D chromatin structure
Target of assay
  • 229histone
  • 229histone modification
  • 122broad histone mark
  • 107narrow histone mark
  • 30control
  • 17transcription factor
  • 10RNA binding protein
  • 2nucleotide modification
Date released
  • 234August, 2021
  • 199February, 2023
  • 176May, 2022
  • 142February, 2021
  • 129August, 2017
  • 106May, 2021
  • 63October, 2019
  • 59September, 2020
  • 57May, 2020
  • 47September, 2023
  • 42March, 2020
  • 40May, 2024
  • 26July, 2019
  • 25February, 2020
  • 19April, 2020
  • 16January, 2021
  • 15May, 2023
  • 13November, 2017
  • 8October, 2017
  • 7August, 2020
  • 7January, 2018
  • 5December, 2019
  • 4July, 2018
  • 4March, 2019
  • 4November, 2020
  • 3March, 2023
  • 3October, 2022
  • 1April, 2019
  • 1August, 2018
  • 1August, 2022
  • 1November, 2018
  • 1November, 2019
  • 1September, 2018
Available data
  • bam
  • 2647bigWig
  • 1481tsv
  • 1413bed narrowPeak
  • 931fastq
  • 687bigBed narrowPeak
  • 378tagAlign
  • 270bed bed3+
  • 263bed broadPeak
  • 226bigBed broadPeak
  • 160txt
  • 153zippedFastqFolder
  • 64xls
  • 35bed bedMethyl
  • 35bigBed bedMethyl
  • 21bedpe bed3+
  • 21hic
  • 11bed bed3
  • 8csv
  • 7bed bedgraph
  • 4hdf5
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tar
Organism
  • 1455Homo sapiens
Biosample type
  • 870tissue
  • 479primary cell
  • 103in vitro differentiated cells
  • cell line
  • 7stem cell
Organ
  • 228pancreas
  • 206kidney
  • 182heart
  • 179epithelium
  • 93bone element
  • 91connective tissue
  • 75liver
  • 54eye
  • 51vasculature
  • 50blood vessel
  • 49adipose tissue
  • 43brain
  • 39artery
  • 39musculature of body
  • 20lung
  • 8blood
  • 8bodily fluid
  • 8limb
  • 8skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2thymus
  • 2vein
  • 1adrenal gland
  • 1bone marrow
  • 1embryo
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1nerve
  • 1pericardium
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1urinary bladder
Project
  • 1013AMP
  • 324HPAP
  • 53T1D
  • 47KPMP
  • 19LungMap
  • 2community
  • 1ITG
Genome assembly (visualization)
  • 194hg19
  • 167GRCh38
  • 5hg18
Lab
  • 692AMP-T2D consortium
  • 324Klaus Kaestner, Upenn
  • 142Katalin Susztak, Upenn
  • 134Kyle Gaulton, UCSD
  • 47KPMP
  • 40Karen Mohlke, UNC
  • 40Patrick T. Ellinor, Broad
  • 19Xin Sun, UCSD
  • 7Struan F.A. Grant, CHOP
  • 4Bing Ren, UCSD
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 2Anna Gloyn, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 111inconsistent ontology term
  • 42audit script error
Audit category:
  • 1missing controlled_by
biosample_type!
  • cell line
files.file_type!
  • bam
BIOSAMPLE
ASSAY

1459 results

search-icontable-tab-icon
Clear Filters
ATAC-seq
ChIP-seq
single cell RNA-seq
total RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
GRO-seq
MeRIP-seq
DNase-seq
snDrop-seq
Capture-C
CRISPR RNA-seq
CRISPRi RNA-seq
DNAme array
tissue
kidney756449611
islet of Langerhans30412674314
bone element84
liver20231203111
left cardiac atrium4018
primary cell
Langerhans cell8548
pancreatic alpha cell2942311
pancreatic beta cell1611161
exocrine cell39
CD8-positive, alpha-beta T cell3321
in vitro differentiated cells
embryonic stem cell63751
adipocyte81411
cardiomyocytes (cardiac muscle cell)222
chondrocyte5
immature adipocyte22
stem cell
SB Ad3.111
hESC1
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
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