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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
179
total RNA-seq
97
ChIP-seq
34
ATAC-seq
4
WGBS
3
small RNA-seq
2
RRBS
1
DNase-seq
1
Hi-C
1
pCHi-C
1
single cell RNA-seq
Assay category
183
Transcription
97
DNA binding
35
DNA accessibility
6
DNA methylation
1
3D chromatin structure
Target of assay
39
transcription factor
38
histone modification
37
histone
21
broad histone mark
20
control
16
narrow histone mark
4
RNA binding protein
3
chromatin remodeller
Date released
143
May, 2020
63
December, 2017
40
May, 2022
31
August, 2017
9
February, 2021
9
July, 2019
8
February, 2023
7
October, 2019
5
December, 2019
4
November, 2018
3
March, 2020
1
February, 2020
Available data
323
bam
290
bigWig
159
tsv
141
bed narrowPeak
98
fastq
tagAlign
65
bigBed narrowPeak
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
4
bed bed3
4
txt
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
323
Homo sapiens
Biosample type
cell line
301
tissue
15
in vitro differentiated cells
7
primary cell
Organ
808
pancreas
635
connective tissue
477
adipose tissue
420
epithelium
307
liver
297
heart
257
kidney
159
bone element
157
vasculature
153
blood vessel
133
brain
86
limb
71
artery
57
eye
47
musculature of body
41
nerve
26
embryo
24
spleen
20
lung
20
vein
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
323
AMP
Genome assembly (visualization)
268
hg19
241
GRCh38
Lab
283
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
inconsistent ontology term
Audit category:
1
inconsistent control read length
biosample_type!
cell line
files.file_type!
bed bed3+
tagAlign
BIOSAMPLE
ASSAY
323 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
RRBS
DNase-seq
Hi-C
pCHi-C
single cell RNA-seq
tissue
liver
167
72
20
3
1
1
1
1
1
right lobe of liver
3
10
1
1
2
1
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
+ See 9 more…
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
5
1
Liver fetal (hepatocyte)
1
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