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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
65
ATAC-seq
64
total RNA-seq
45
WGBS
37
single cell RNA-seq
22
snATAC-seq
18
small RNA-seq
8
Hi-C
2
FAIRE-seq
Assay category
119
Transcription
89
DNA accessibility
45
DNA methylation
8
3D chromatin structure
Target of assay
3
control
Date released
574
February, 2021
378
May, 2021
340
May, 2020
284
October, 2019
275
August, 2021
218
June, 2019
176
May, 2022
124
August, 2017
123
February, 2023
120
May, 2019
118
July, 2018
85
July, 2019
82
November, 2017
80
April, 2019
53
March, 2020
47
September, 2023
45
November, 2019
40
May, 2024
25
February, 2020
19
April, 2020
18
September, 2020
16
January, 2021
16
October, 2018
15
May, 2023
10
December, 2019
10
November, 2020
6
October, 2017
5
April, 2018
4
March, 2019
3
March, 2023
3
October, 2022
2
January, 2018
1
August, 2022
Available data
134
zippedFastqFolder
106
bam
105
bigWig
65
tsv
45
bed narrowPeak
fastq
bed bedMethyl
23
bigBed bedMethyl
7
txt
5
bed bed3+
4
hdf5
2
bigBed narrowPeak
Organism
261
Homo sapiens
Biosample type
156
primary cell
105
tissue
Organ
87
epithelium
84
pancreas
49
liver
17
connective tissue
17
heart
16
brain
12
adipose tissue
10
blood vessel
10
musculature of body
10
vasculature
7
kidney
4
limb
3
artery
1
pericardium
Project
134
HPAP
127
AMP
Genome assembly (visualization)
97
hg19
71
GRCh38
Lab
134
Klaus Kaestner, Upenn
87
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
1
audit script error
biosample_type!
cell line
files.file_type!
bed bedMethyl
fastq
BIOSAMPLE
ASSAY
261 results
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ATAC-seq
total RNA-seq
WGBS
single cell RNA-seq
snATAC-seq
small RNA-seq
Hi-C
FAIRE-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
cerebellar granule cell
2
+ See 18 more…
tissue
liver
20
22
1
heart left ventricle
2
2
2
omental fat pad
4
1
right lobe of liver
2
1
2
subcutaneous adipose tissue
4
1
+ See 19 more…
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