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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
DNase-seq
31
ChIP-seq
3
ATAC-seq
1
Hi-C
Assay category
190
DNA accessibility
31
DNA binding
1
3D chromatin structure
Target of assay
19
histone
19
histone modification
11
narrow histone mark
8
broad histone mark
8
control
4
RNA binding protein
4
transcription factor
Date released
574
February, 2021
378
May, 2021
340
May, 2020
284
October, 2019
275
August, 2021
218
June, 2019
176
May, 2022
124
August, 2017
123
February, 2023
120
May, 2019
118
July, 2018
85
July, 2019
82
November, 2017
80
April, 2019
53
March, 2020
47
September, 2023
45
November, 2019
40
May, 2024
25
February, 2020
19
April, 2020
18
September, 2020
16
January, 2021
16
October, 2018
15
May, 2023
10
December, 2019
10
November, 2020
6
October, 2017
5
April, 2018
4
March, 2019
3
March, 2023
3
October, 2022
2
January, 2018
1
August, 2022
Available data
219
bam
210
bed narrowPeak
210
bigBed narrowPeak
210
bigWig
188
bed broadPeak
187
bed bed3+
187
bigBed broadPeak
1
bedpe
fastq
1
hic
Organism
222
Homo sapiens
Biosample type
167
tissue
55
primary cell
Organ
81
kidney
43
musculature of body
35
heart
32
limb
30
brain
20
epithelium
18
connective tissue
18
ureter
8
pancreas
7
eye
7
vasculature
5
blood vessel
2
artery
2
liver
1
adipose tissue
Project
222
AMP
Genome assembly (visualization)
212
GRCh38
190
hg19
Lab
218
AMP-T2D consortium
2
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
26
inconsistent ontology term
biosample_type!
cell line
files.file_type!
bed bedMethyl
fastq
BIOSAMPLE
ASSAY
222 results
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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
Hi-C
tissue
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
brain
12
+ See 35 more…
primary cell
cardiac fibroblast
3
5
skeletal muscle satellite cell
8
mesenchymal stem cell
7
cardiac muscle cell
1
3
epithelial cell of proximal tubule
1
3
+ See 17 more…
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