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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
ChIP-seq
24
total RNA-seq
20
ATAC-seq
4
DNase-seq
4
pCHi-C
3
Hi-C
Assay category
195
DNA binding
24
DNA accessibility
24
Transcription
3
3D chromatin structure
Target of assay
168
histone
168
histone modification
129
narrow histone mark
39
broad histone mark
27
control
Date released
373
May, 2021
340
May, 2020
325
August, 2017
270
August, 2021
250
October, 2019
223
February, 2021
197
June, 2019
144
February, 2023
135
July, 2018
120
May, 2022
115
May, 2019
85
November, 2017
83
July, 2019
80
April, 2019
75
December, 2017
51
March, 2020
51
October, 2018
47
September, 2023
44
November, 2019
40
May, 2024
40
September, 2020
39
February, 2018
23
February, 2020
23
November, 2018
22
October, 2017
19
April, 2020
16
April, 2018
16
January, 2021
14
May, 2023
12
September, 2018
10
November, 2020
7
December, 2018
7
January, 2019
6
January, 2018
6
September, 2017
5
March, 2019
4
December, 2019
3
March, 2023
2
June, 2018
1
August, 2022
Available data
191
bam
163
bigWig
154
bed narrowPeak
49
tagAlign
48
bigBed narrowPeak
10
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
3
bedpe bed3+
3
hic
1
tagAlign bed3+
Organism
250
Homo sapiens
Biosample type
241
tissue
cell line
8
in vitro differentiated cells
1
primary cell
Organ
86
brain
69
limb
47
blood vessel
47
vasculature
42
nerve
epithelium
26
artery
21
eye
21
vein
15
kidney
8
heart
7
liver
4
connective tissue
4
gonad
4
ovary
3
pancreas
2
pituitary gland
adipose tissue
1
lymph node
1
skin of body
Project
250
AMP
Genome assembly (visualization)
171
hg19
166
GRCh38
Lab
250
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
biosample_type!
cell line
files.file_type!
bed bedgraph
organ_slims!
adipose tissue
epithelium
target.investigated_as!
other context
BIOSAMPLE
ASSAY
250 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
pCHi-C
Hi-C
tissue
islet of Langerhans
21
14
13
4
tibial nerve
35
4
1
2
tibial artery
23
1
2
heart
5
2
1
brain
5
1
+ See 77 more…
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
1
1
1
cardiomyocytes (cardiac muscle cell)
1
1
1
adipocyte
2
primary cell
Heart fetal (cardiac muscle cell)
1
See all biosamples
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