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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
203
ChIP-seq
10
snATAC-seq
9
single cell RNA-seq
4
ATAC-seq
3
Hi-C
2
RRBS
1
FAIRE-seq
Assay category
203
DNA binding
15
DNA accessibility
9
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
175
histone
175
histone modification
109
narrow histone mark
66
broad histone mark
28
control
Date released
85
October, 2019
79
November, 2017
28
May, 2019
19
April, 2020
13
October, 2017
7
July, 2019
1
February, 2023
Available data
243
bam
222
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
231
Homo sapiens
Biosample type
225
tissue
7
primary cell
Organ
451
pancreas
302
epithelium
239
kidney
226
liver
213
brain
196
connective tissue
181
heart
137
vasculature
135
blood vessel
101
bone element
87
adipose tissue
79
limb
65
artery
52
eye
41
musculature of body
36
nerve
23
embryo
23
spleen
19
lung
18
vein
16
skeleton
8
blood
8
bodily fluid
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
213
AMP
19
LungMap
Genome assembly (visualization)
159
GRCh38
115
hg19
Lab
213
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
2
inconsistent ontology term
Audit category:
2
missing controlled_by
biosample_type!
cell line
files.file_type!
bed broadPeak
tsv
BIOSAMPLE
ASSAY
232 results
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ChIP-seq
snATAC-seq
single cell RNA-seq
ATAC-seq
Hi-C
RRBS
FAIRE-seq
tissue
layer of hippocampus
23
brain
17
1
1
lung
10
9
angular gyrus
15
substantia nigra
15
+ See 67 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
brain pericyte
1
See all biosamples
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