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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
37
ATAC-seq
21
ChIP-seq
4
total RNA-seq
2
single cell RNA-seq
Assay category
37
DNA accessibility
21
DNA binding
6
Transcription
Target of assay
20
histone
20
histone modification
14
broad histone mark
control
6
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
35
February, 2023
19
October, 2019
3
July, 2019
3
May, 2019
2
August, 2021
2
February, 2020
Available data
62
bed narrowPeak
29
bam
29
bigWig
25
bigBed narrowPeak
6
tsv
4
bed bed3+
bed broadPeak
4
bigBed broadPeak
Organism
64
Homo sapiens
Biosample type
cell line
62
tissue
2
primary cell
Organ
792
pancreas
639
connective tissue
464
adipose tissue
398
epithelium
337
liver
279
heart
248
kidney
208
brain
159
bone element
133
vasculature
132
blood vessel
69
limb
64
artery
56
eye
44
musculature of body
30
nerve
22
embryo
20
lung
16
skeleton
16
spleen
16
vein
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
64
AMP
Genome assembly (visualization)
60
GRCh38
25
hg19
Lab
64
AMP-T2D consortium
biosample_type!
cell line
files.file_type!
bed broadPeak
target.investigated_as!
control
BIOSAMPLE
ASSAY
64 results
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ATAC-seq
ChIP-seq
total RNA-seq
single cell RNA-seq
tissue
coronary artery
36
3
1
tibial artery
1
18
1
pulmonary artery
2
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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