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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
95
total RNA-seq
70
single cell RNA-seq
49
ATAC-seq
47
WGBS
24
ChIP-seq
7
Hi-C
6
RRBS
2
DNase-seq
1
RNA microarray
Assay category
165
Transcription
53
DNA methylation
51
DNA accessibility
24
DNA binding
7
3D chromatin structure
Target of assay
24
control
5
histone
histone modification
4
broad histone mark
1
narrow histone mark
Date released
80
May, 2022
39
February, 2023
33
April, 2018
33
July, 2018
26
September, 2018
19
September, 2020
13
July, 2019
12
August, 2017
8
October, 2019
7
August, 2020
6
December, 2019
6
February, 2021
3
August, 2018
3
December, 2017
May, 2021
3
October, 2022
2
June, 2019
2
November, 2017
2
October, 2018
1
August, 2021
1
June, 2018
1
March, 2020
1
May, 2019
Available data
206
fastq
181
bam
170
bigWig
119
tsv
80
zippedFastqFolder
bed narrowPeak
46
bigBed narrowPeak
18
bed bed3+
18
bed broadPeak
18
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
5
hic
4
bedpe bed3+
3
cool
2
hdf5
1
tagAlign
1
tar
Organism
301
Homo sapiens
Biosample type
295
primary cell
cell line
3
in vitro differentiated cells
3
tissue
Organ
600
pancreas
564
connective tissue
448
adipose tissue
301
epithelium
237
liver
160
kidney
150
bone element
145
heart
63
brain
44
vasculature
42
blood vessel
30
musculature of body
29
limb
26
eye
20
lung
16
nerve
13
artery
12
embryo
11
spleen
8
blood
8
bodily fluid
8
skeleton
4
vein
2
intestine
2
pericardium
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
152
HPAP
149
AMP
Genome assembly (visualization)
125
hg19
120
GRCh38
Lab
152
Klaus Kaestner, Upenn
149
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
5
audit script error
biosample_type!
cell line
files.file_type!
bed narrowPeak
month_released!
May, 2021
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
301 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
WGBS
ChIP-seq
Hi-C
RRBS
DNase-seq
RNA microarray
primary cell
pancreatic alpha cell
52
12
29
31
6
1
pancreatic beta cell
21
12
16
16
6
1
pancreatic acinar cell
4
12
4
1
pancreatic ductal cell
4
10
pancreatic delta cell
11
+ See 16 more…
in vitro differentiated cells
Hepatic endoderm
2
hepatocyte
1
tissue
pigmented layer of retina
2
renal glomerulus
1
See all biosamples
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