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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
57
total RNA-seq
9
ChIP-seq
6
snATAC-seq
2
Hi-C
Assay category
163
Transcription
9
DNA binding
6
DNA accessibility
2
3D chromatin structure
Target of assay
8
control
1
broad histone mark
1
histone
1
histone modification
Date released
313
May, 2020
244
May, 2021
190
August, 2017
180
August, 2021
166
July, 2018
162
May, 2022
156
February, 2021
121
February, 2023
106
October, 2019
83
July, 2019
59
September, 2020
49
March, 2020
47
April, 2018
47
September, 2023
27
November, 2017
27
September, 2018
23
February, 2018
23
February, 2020
23
May, 2019
22
December, 2017
20
November, 2019
19
April, 2020
16
January, 2021
15
April, 2019
14
May, 2023
13
October, 2018
11
October, 2017
10
December, 2019
10
November, 2018
7
August, 2020
6
January, 2018
September, 2017
5
June, 2019
5
March, 2019
4
December, 2018
4
November, 2020
3
August, 2018
3
June, 2018
3
March, 2023
3
October, 2022
1
August, 2022
1
January, 2019
Available data
106
tsv
bed narrowPeak
64
xls
57
txt
41
bam
24
tagAlign
23
bigWig
3
bed bed3+
1
bedpe bed3+
1
hic
Organism
180
Homo sapiens
Biosample type
164
tissue
cell line
15
in vitro differentiated cells
1
primary cell
Organ
92
heart
64
kidney
6
blood vessel
6
vasculature
connective tissue
2
artery
2
pancreas
1
adipose tissue
1
epithelium
1
liver
Project
180
AMP
Genome assembly (visualization)
8
hg19
7
GRCh38
Lab
114
AMP-T2D consortium
64
Katalin Susztak, Upenn
2
Bing Ren, UCSD
biosample_type!
cell line
files.file_type!
bed narrowPeak
month_released!
September, 2017
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
180 results
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Clear Filters
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
Hi-C
tissue
kidney
8
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 10 more…
in vitro differentiated cells
neural progenitor cell
7
8
primary cell
hepatocyte
1
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