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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
single cell RNA-seq
57
total RNA-seq
11
ATAC-seq
10
ChIP-seq
6
snATAC-seq
4
RRBS
3
snDrop-seq
2
DNase-seq
2
RNA microarray
1
Hi-C
1
small RNA-seq
Assay category
122
Transcription
19
DNA accessibility
10
DNA binding
4
DNA methylation
1
3D chromatin structure
Target of assay
9
control
1
RNA binding protein
1
transcription factor
Date released
64
August, 2021
47
September, 2023
14
May, 2023
10
July, 2019
8
February, 2021
7
October, 2019
5
April, 2019
3
December, 2019
1
February, 2020
1
June, 2019
1
May, 2019
Available data
bed narrowPeak
129
bam
119
bigWig
103
bigBed narrowPeak
78
bed bed3+
78
bed broadPeak
78
bigBed broadPeak
64
xls
62
txt
19
tsv
5
csv
4
bed bedMethyl
4
bigBed bedMethyl
1
hic
Organism
161
Homo sapiens
Biosample type
147
tissue
14
primary cell
cell line
Organ
661
pancreas
609
connective tissue
478
adipose tissue
309
epithelium
257
liver
160
kidney
151
bone element
148
heart
83
brain
49
vasculature
47
blood vessel
36
musculature of body
30
limb
28
eye
20
lung
16
nerve
15
embryo
13
artery
11
spleen
9
vein
8
blood
8
bodily fluid
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
114
AMP
47
KPMP
Genome assembly (visualization)
19
GRCh38
13
hg19
Lab
78
Katalin Susztak, Upenn
47
KPMP
36
AMP-T2D consortium
Audit category:
7
audit script error
3
inconsistent ontology term
biosample_type!
cell line
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
161 results
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single cell RNA-seq
total RNA-seq
ATAC-seq
ChIP-seq
snATAC-seq
RRBS
snDrop-seq
DNase-seq
RNA microarray
Hi-C
small RNA-seq
tissue
kidney
64
49
11
7
6
1
1
metanephros
1
1
C1 segment of cervical spinal cord
1
kidney (Cortex-Medulla)
1
kidney (cortex)
1
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primary cell
epithelial cell of proximal tubule
1
2
1
kidney epithelial cell
1
1
1
kidney glomerular epithelial cell
1
1
kidney tubule cell
1
1
renal cortical epithelial cell
1
1
+ See 1 more…
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