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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1414total RNA-seq
  • 454ChIP-seq
  • 369single cell RNA-seq
  • 234ATAC-seq
  • 87RNA microarray
  • 84snATAC-seq
  • 74WGBS
  • 51pCHi-C
  • 30Hi-C
  • 21RRBS
  • 18small RNA-seq
  • 5GRO-seq
  • 4MeRIP-seq
  • 3DNase-seq
  • 3snDrop-seq
  • 2Capture-C
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1DNAme array
Assay category
  • 1803Transcription
  • 454DNA binding
  • 321DNA accessibility
  • 96DNA methylation
  • 303D chromatin structure
Target of assay
  • 260control
  • 163histone
  • 163histone modification
  • 84narrow histone mark
  • 79broad histone mark
  • 36transcription factor
  • 7RNA binding protein
  • 2nucleotide modification
Date released
  • 610February, 2021
  • 313May, 2020
  • 269August, 2017
  • 246May, 2021
  • 183August, 2021
  • 168July, 2018
  • 162May, 2022
  • 134February, 2023
  • 110October, 2019
  • 101July, 2019
  • 59September, 2020
  • 51March, 2020
  • 49April, 2018
  • 47September, 2023
  • 31October, 2018
  • 27November, 2017
  • 27September, 2018
  • 25February, 2020
  • 23February, 2018
  • 23May, 2019
  • 22December, 2017
  • 20November, 2019
  • 19April, 2020
  • 16January, 2021
  • 15April, 2019
  • 15May, 2023
  • 11October, 2017
  • 10December, 2019
  • 10November, 2018
  • 8June, 2019
  • 8November, 2020
  • 7August, 2020
  • 7January, 2018
  • 6September, 2017
  • 5March, 2019
  • 4August, 2018
  • 4December, 2018
  • 3June, 2018
  • 3March, 2023
  • 3October, 2022
  • 1August, 2022
  • 1January, 2019
Available data
  • 2810bam
  • 2647bigWig
  • 1481tsv
  • bed narrowPeak
  • 931fastq
  • 687bigBed narrowPeak
  • 378tagAlign
  • 270bed bed3+
  • 263bed broadPeak
  • 226bigBed broadPeak
  • 160txt
  • 153zippedFastqFolder
  • 64xls
  • 35bed bedMethyl
  • 35bigBed bedMethyl
  • 21bedpe bed3+
  • 21hic
  • 11bed bed3
  • 8csv
  • 7bed bedgraph
  • 4hdf5
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tar
Organism
  • 2851Homo sapiens
Biosample type
  • 1793tissue
  • 793primary cell
  • 262in vitro differentiated cells
  • cell line
  • 8stem cell
Organ
  • 661pancreas
  • 609connective tissue
  • 478adipose tissue
  • 309epithelium
  • 257liver
  • 160kidney
  • 151bone element
  • 148heart
  • 83brain
  • 49vasculature
  • 47blood vessel
  • 36musculature of body
  • 30limb
  • 28eye
  • 20lung
  • 16nerve
  • 15embryo
  • 13artery
  • 11spleen
  • 9vein
  • 8blood
  • 8bodily fluid
  • 8skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 2314AMP
  • 324HPAP
  • 149T1D
  • 47KPMP
  • 19LungMap
  • 2community
  • 1ITG
Genome assembly (visualization)
  • 1485hg19
  • 1389GRCh38
  • 5hg18
Lab
  • 2144AMP-T2D consortium
  • 324Klaus Kaestner, Upenn
  • 206Kyle Gaulton, UCSD
  • 78Katalin Susztak, Upenn
  • 47KPMP
  • 20Karen Mohlke, UNC
  • 19Xin Sun, UCSD
  • 4Bing Ren, UCSD
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 3Struan F.A. Grant, CHOP
  • 2Anna Gloyn, Oxford
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 219inconsistent ontology term
  • 42audit script error
Audit category:
  • 40missing controlled_by
biosample_type!
  • cell line
files.file_type!
  • bed narrowPeak
BIOSAMPLE
ASSAY

2856 results

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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
GRO-seq
MeRIP-seq
DNase-seq
snDrop-seq
Capture-C
CRISPR RNA-seq
CRISPRi RNA-seq
DNAme array
tissue
islet of Langerhans2925163174314
adipose tissue3821231
liver16763131111
kidney4976411611
bone element84
primary cell
Langerhans cell8548
pancreatic alpha cell5261229311
pancreatic beta cell2161216161
monocyte541211
exocrine cell39
in vitro differentiated cells
cardiomyocytes59
embryonic stem cell73851
adipocyte52571
cardiac precursors (cardiac muscle cell)191
neural progenitor cell78
stem cell
SB Ad3.111
hESC11
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
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