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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
237
total RNA-seq
123
ChIP-seq
84
RNA microarray
34
ATAC-seq
6
DNase-seq
4
WGBS
3
small RNA-seq
2
Hi-C
2
pCHi-C
1
single cell RNA-seq
Assay category
241
Transcription
123
DNA binding
40
DNA accessibility
4
DNA methylation
2
3D chromatin structure
Target of assay
85
histone modification
84
histone
narrow histone mark
48
control
41
transcription factor
33
broad histone mark
4
RNA binding protein
3
chromatin remodeller
Date released
166
May, 2020
151
February, 2021
56
December, 2017
40
August, 2017
40
May, 2022
9
July, 2019
8
February, 2023
7
November, 2018
5
December, 2019
5
October, 2019
3
March, 2020
2
August, 2021
2
June, 2019
1
February, 2020
1
May, 2021
Available data
338
bam
305
bigWig
217
tsv
98
bed narrowPeak
88
txt
86
fastq
57
bigBed narrowPeak
39
tagAlign
10
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
4
bed bed3
2
bed bedMethyl
bigBed bedMethyl
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
496
Homo sapiens
Biosample type
474
tissue
cell line
12
primary cell
10
in vitro differentiated cells
Organ
784
pancreas
648
connective tissue
477
adipose tissue
396
epithelium
337
liver
316
kidney
279
heart
167
brain
159
bone element
142
vasculature
138
blood vessel
106
limb
79
musculature of body
69
artery
57
eye
35
nerve
21
embryo
21
spleen
20
lung
18
ureter
16
skeleton
16
vein
8
blood
8
bodily fluid
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
495
AMP
1
T1D
Genome assembly (visualization)
320
hg19
294
GRCh38
Lab
455
AMP-T2D consortium
40
Karen Mohlke, UNC
1
Kyle Gaulton, UCSD
Audit category:
85
inconsistent ontology term
27
inconsistent control
biosample_type!
cell line
files.file_type!
bigBed bedMethyl
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
496 results
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total RNA-seq
ChIP-seq
RNA microarray
ATAC-seq
DNase-seq
WGBS
small RNA-seq
Hi-C
pCHi-C
single cell RNA-seq
tissue
liver
167
103
20
2
3
1
1
1
1
bone element
84
bone tissue
58
right lobe of liver
3
8
1
2
1
2
acetabular part of hip bone
1
1
+ See 11 more…
primary cell
hepatocyte
5
2
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
megakaryocyte
1
in vitro differentiated cells
hepatocyte
10
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