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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
175
total RNA-seq
174
ChIP-seq
22
ATAC-seq
4
WGBS
3
small RNA-seq
2
RRBS
1
DNase-seq
1
Hi-C
1
pCHi-C
1
single cell RNA-seq
Assay category
179
Transcription
174
DNA binding
23
DNA accessibility
6
DNA methylation
1
3D chromatin structure
Target of assay
85
histone modification
84
histone
51
narrow histone mark
48
control
41
transcription factor
33
broad histone mark
4
RNA binding protein
3
chromatin remodeller
Date released
193
May, 2020
63
December, 2017
54
August, 2017
40
May, 2022
10
July, 2019
7
October, 2019
5
December, 2019
4
August, 2021
4
November, 2018
2
March, 2020
1
February, 2020
1
February, 2021
Available data
315
bam
290
bigWig
159
tsv
133
bed narrowPeak
98
fastq
74
tagAlign
65
bigBed narrowPeak
12
bed bed3+
5
bed broadPeak
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
1
csv
1
hdf5
hic
Organism
384
Homo sapiens
Biosample type
357
tissue
cell line
15
in vitro differentiated cells
12
primary cell
Organ
823
pancreas
675
connective tissue
489
adipose tissue
399
epithelium
384
liver
294
heart
256
kidney
248
brain
159
bone element
150
vasculature
148
blood vessel
86
limb
71
artery
61
musculature of body
57
eye
41
nerve
29
embryo
24
spleen
20
lung
16
skeleton
16
vein
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
384
AMP
Genome assembly (visualization)
289
hg19
258
GRCh38
Lab
344
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
inconsistent ontology term
Audit category:
1
inconsistent control read length
biosample_type!
cell line
files.file_type!
bigBed broadPeak
hic
month_released!
September, 2020
BIOSAMPLE
ASSAY
384 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
RRBS
DNase-seq
Hi-C
pCHi-C
single cell RNA-seq
tissue
liver
167
145
20
3
1
1
1
1
right lobe of liver
3
10
1
1
2
1
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
5
4
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
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