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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
128
ChIP-seq
93
single cell RNA-seq
35
ATAC-seq
10
total RNA-seq
3
Hi-C
3
pCHi-C
Assay category
128
DNA binding
103
Transcription
35
DNA accessibility
3
3D chromatin structure
Target of assay
97
histone
97
histone modification
57
broad histone mark
40
narrow histone mark
18
control
13
transcription factor
11
RNA binding protein
Date released
92
August, 2021
57
April, 2019
40
May, 2024
36
February, 2023
July, 2019
21
May, 2019
8
October, 2019
7
March, 2020
5
June, 2019
3
February, 2020
3
May, 2021
Available data
175
bed narrowPeak
147
bigWig
124
bam
105
tsv
94
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
bigBed broadPeak
3
bedpe bed3+
3
hic
Organism
272
Homo sapiens
Biosample type
266
tissue
cell line
5
primary cell
1
in vitro differentiated cells
Organ
842
pancreas
657
connective tissue
477
adipose tissue
409
epithelium
375
liver
272
heart
246
kidney
230
brain
159
bone element
140
vasculature
139
blood vessel
81
limb
68
artery
56
eye
53
musculature of body
41
nerve
29
embryo
24
spleen
20
lung
17
vein
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
272
AMP
Genome assembly (visualization)
151
GRCh38
80
hg19
Lab
232
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
4
inconsistent ontology term
biosample_type!
cell line
files.file_type!
bigBed broadPeak
tar
month_released!
July, 2019
BIOSAMPLE
ASSAY
272 results
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ChIP-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
Hi-C
pCHi-C
tissue
left cardiac atrium
40
18
heart left ventricle
35
18
1
1
1
coronary artery
5
35
1
heart right ventricle
13
17
1
1
1
right cardiac atrium
6
18
1
+ See 10 more…
primary cell
cardiac fibroblast
5
in vitro differentiated cells
cardiac fibroblast
1
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