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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
ChIP-seq
Assay category
76
DNA binding
Target of assay
608
histone modification
607
histone
narrow histone mark
260
control
250
broad histone mark
76
transcription factor
17
RNA binding protein
2
chromatin remodeller
2
nucleotide modification
Date released
45
August, 2017
16
May, 2021
9
December, 2017
5
May, 2024
1
April, 2019
Available data
140
bigWig
136
bam
117
bed narrowPeak
117
fastq
bigBed narrowPeak
19
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
4
tagAlign
Organism
76
Homo sapiens
Biosample type
47
in vitro differentiated cells
cell line
29
tissue
Organ
34
connective tissue
12
adipose tissue
8
pancreas
5
heart
4
liver
3
embryo
1
epithelium
1
kidney
Project
76
AMP
Genome assembly (visualization)
63
GRCh38
58
hg19
Lab
59
AMP-T2D consortium
12
Kyle Gaulton, UCSD
5
Patrick T. Ellinor, Broad
Audit category:
3
inconsistent ontology term
Audit category:
23
missing controlled_by
Audit category:
10
inconsistent control read length
biosample_type!
cell line
files.file_type!
bigBed narrowPeak
organ_slims!
esophagus
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
76 results
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ChIP-seq
in vitro differentiated cells
adipocyte
22
embryonic stem cell
12
cardiomyocytes
3
pancreatic endoderm
3
Posterior foregut
2
+ See 3 more…
tissue
white adipose tissue
12
islet of Langerhans
7
left cardiac atrium
5
liver
4
kidney
1
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