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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 408ChIP-seq
  • 369ATAC-seq
  • 263single cell RNA-seq
  • 240total RNA-seq
  • 87RNA microarray
  • 84snATAC-seq
  • 58WGBS
  • 51pCHi-C
  • 26Hi-C
  • 21RRBS
  • 4MeRIP-seq
  • 3DNase-seq
  • 3snDrop-seq
  • 2Capture-C
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1DNAme array
Assay category
  • 505Transcription
  • 456DNA accessibility
  • 408DNA binding
  • 80DNA methylation
  • 263D chromatin structure
Target of assay
  • 250control
  • 147histone
  • 147histone modification
  • 74narrow histone mark
  • 73broad histone mark
  • 13transcription factor
  • 6RNA binding protein
  • 2nucleotide modification
Date released
  • 250August, 2021
  • 196February, 2023
  • 180May, 2022
  • 151February, 2021
  • 139August, 2017
  • 97October, 2019
  • 80May, 2020
  • 80May, 2021
  • 56September, 2020
  • 47September, 2023
  • 40March, 2020
  • 29October, 2018
  • 26November, 2019
  • 25February, 2020
  • 25November, 2017
  • 23July, 2019
  • 23May, 2019
  • 22December, 2017
  • 19April, 2020
  • 16January, 2021
  • 15April, 2019
  • 15May, 2023
  • 9October, 2017
  • 8February, 2018
  • 8June, 2019
  • 6September, 2017
  • 5December, 2019
  • 5March, 2019
  • 5November, 2020
  • 4December, 2018
  • 4July, 2018
  • 4November, 2018
  • 3March, 2023
  • 3October, 2022
  • 1August, 2018
  • 1August, 2022
  • 1January, 2019
  • 1September, 2018
Available data
  • 2810bam
  • bigWig
  • 1481tsv
  • 1413bed narrowPeak
  • 931fastq
  • 687bigBed narrowPeak
  • 378tagAlign
  • 270bed bed3+
  • 263bed broadPeak
  • 226bigBed broadPeak
  • 160txt
  • 153zippedFastqFolder
  • 64xls
  • 35bed bedMethyl
  • 35bigBed bedMethyl
  • 21bedpe bed3+
  • 21hic
  • 11bed bed3
  • 8csv
  • 7bed bedgraph
  • 4hdf5
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tar
Organism
  • 1617Homo sapiens
Biosample type
  • 1005tissue
  • 475primary cell
  • cell line
  • 135in vitro differentiated cells
  • 7stem cell
Organ
  • 287pancreas
  • 216kidney
  • 194epithelium
  • 159heart
  • 114connective tissue
  • 101bone element
  • 100liver
  • 71vasculature
  • 70blood vessel
  • 66adipose tissue
  • 64brain
  • 55eye
  • 46artery
  • 31limb
  • 28musculature of body
  • 20lung
  • 16skeleton
  • 12nerve
  • 9spleen
  • 8blood
  • 8bodily fluid
  • 8embryo
  • 7vein
  • 5gonad
  • 5ovary
  • 2intestine
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1pericardium
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 1186AMP
  • 314HPAP
  • 53T1D
  • 47KPMP
  • 19LungMap
  • 2community
  • 1ITG
Genome assembly (visualization)
  • 187GRCh38
  • 184hg19
Lab
  • 946AMP-T2D consortium
  • 314Klaus Kaestner, Upenn
  • 142Katalin Susztak, Upenn
  • 118Kyle Gaulton, UCSD
  • 47KPMP
  • 20Karen Mohlke, UNC
  • 19Xin Sun, UCSD
  • 4Bing Ren, UCSD
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 2Anna Gloyn, Oxford
  • 2Mark McCarthy, Oxford
  • 2Struan F.A. Grant, CHOP
  • 1ITG
  • 1Maike Sander, UCSD
Audit category:
  • 127inconsistent ontology term
  • 42audit script error
Audit category:
  • 2missing controlled_by
biosample_type!
  • cell line
files.file_type!
  • bigWig
BIOSAMPLE
ASSAY

1622 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
MeRIP-seq
DNase-seq
snDrop-seq
Capture-C
CRISPR RNA-seq
CRISPRi RNA-seq
DNAme array
tissue
kidney7756449611
islet of Langerhans42653274314
liver631203111
bone element84
coronary artery2351
primary cell
Langerhans cell8548
pancreatic alpha cell62242311
pancreatic beta cell61311161
exocrine cell39
naive thymus-derived CD4-positive, alpha-beta T cell22211
in vitro differentiated cells
embryonic stem cell3851
adipocyte20511
neural progenitor cell810
cardiomyocytes (cardiac muscle cell)1222
pancreatic endoderm6
stem cell
SB Ad3.111
hESC1
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
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