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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1182total RNA-seq
  • 950ChIP-seq
  • 441ATAC-seq
  • 235single cell RNA-seq
  • 198DNase-seq
  • 87RNA microarray
  • 58WGBS
  • 57snATAC-seq
  • 50pCHi-C
  • 30Hi-C
  • 18small RNA-seq
  • 17RRBS
  • 4MeRIP-seq
  • 3FAIRE-seq
  • 3snDrop-seq
  • 2Capture-C
  • 1CRISPR RNA-seq
  • 1CRISPRi RNA-seq
  • 1DNAme array
Assay category
  • 1437Transcription
  • 950DNA binding
  • 699DNA accessibility
  • 76DNA methylation
  • 303D chromatin structure
Target of assay
  • 765histone
  • 765histone modification
  • 393narrow histone mark
  • 372broad histone mark
  • 154control
  • 36transcription factor
  • 23RNA binding protein
  • 2nucleotide modification
Date released
  • 574February, 2021
  • 378May, 2021
  • 340May, 2020
  • 284October, 2019
  • 275August, 2021
  • 218June, 2019
  • 176May, 2022
  • 124August, 2017
  • 123February, 2023
  • 120May, 2019
  • 118July, 2018
  • 108July, 2019
  • 82November, 2017
  • 80April, 2019
  • 53March, 2020
  • 47September, 2023
  • 45November, 2019
  • 40May, 2024
  • 25February, 2020
  • 19April, 2020
  • 18September, 2020
  • 16January, 2021
  • 16October, 2018
  • 15May, 2023
  • 10December, 2019
  • 10November, 2020
  • 6October, 2017
  • 5April, 2018
  • 4March, 2019
  • 3March, 2023
  • 3October, 2022
  • 2January, 2018
  • 1August, 2022
Available data
  • 2810bam
  • 2647bigWig
  • 1481tsv
  • 1413bed narrowPeak
  • fastq
  • 687bigBed narrowPeak
  • 378tagAlign
  • 270bed bed3+
  • 263bed broadPeak
  • 226bigBed broadPeak
  • 160txt
  • 153zippedFastqFolder
  • 64xls
  • 35bed bedMethyl
  • 35bigBed bedMethyl
  • 21bedpe bed3+
  • 21hic
  • 11bed bed3
  • 8csv
  • 7bed bedgraph
  • 4hdf5
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tar
Organism
  • 3334Homo sapiens
Biosample type
  • 2400tissue
  • 679primary cell
  • 253in vitro differentiated cells
  • cell line
  • 6stem cell
Organ
  • 583connective tissue
  • 447adipose tissue
  • 383pancreas
  • 335kidney
  • 327heart
  • 292liver
  • 265brain
  • 188epithelium
  • 164vasculature
  • 161blood vessel
  • 159bone element
  • 122limb
  • 94musculature of body
  • 75artery
  • 61eye
  • 43nerve
  • 22vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 8blood
  • 8bodily fluid
  • 5gonad
  • 5ovary
  • 2embryo
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1urinary bladder
Project
  • 2879AMP
  • 235T1D
  • 155HPAP
  • 47KPMP
  • 19LungMap
  • 2community
  • 1ITG
Genome assembly (visualization)
  • 2042hg19
  • 2033GRCh38
Lab
  • 2561AMP-T2D consortium
  • 314Kyle Gaulton, UCSD
  • 155Klaus Kaestner, Upenn
  • 142Katalin Susztak, Upenn
  • 47KPMP
  • 40Karen Mohlke, UNC
  • 40Patrick T. Ellinor, Broad
  • 19Xin Sun, UCSD
  • 7Struan F.A. Grant, CHOP
  • 4Bing Ren, UCSD
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 2Anna Gloyn, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 250inconsistent ontology term
  • 15audit script error
biosample_type!
  • cell line
files.file_type!
  • fastq
BIOSAMPLE
ASSAY

3338 results

search-icontable-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
WGBS
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
RRBS
MeRIP-seq
FAIRE-seq
snDrop-seq
Capture-C
CRISPR RNA-seq
CRISPRi RNA-seq
DNAme array
tissue
adipose tissue38231
islet of Langerhans195434874314
liver167782012111
kidney49277564136111
bone element84
primary cell
monocyte54851511
Langerhans cell5121
pancreatic alpha cell22251
CD8-positive, alpha-beta T cell43321
pancreatic beta cell13161
in vitro differentiated cells
cardiomyocytes593
embryonic stem cell53761
neural progenitor cell72110
adipocyte51481
cardiac precursors (cardiac muscle cell)1911
stem cell
SB Ad3.111
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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