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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
175
total RNA-seq
174
ChIP-seq
22
ATAC-seq
6
DNase-seq
4
WGBS
3
small RNA-seq
2
RRBS
1
Hi-C
1
pCHi-C
1
single cell RNA-seq
Assay category
179
Transcription
174
DNA binding
28
DNA accessibility
6
DNA methylation
1
3D chromatin structure
Target of assay
85
histone modification
84
histone
51
narrow histone mark
48
control
41
transcription factor
33
broad histone mark
4
RNA binding protein
3
chromatin remodeller
Date released
193
May, 2020
63
December, 2017
54
August, 2017
40
May, 2022
9
July, 2019
7
November, 2018
7
October, 2019
5
December, 2019
4
August, 2021
3
March, 2020
2
June, 2019
1
February, 2020
1
February, 2021
Available data
315
bam
290
bigWig
159
tsv
133
bed narrowPeak
98
fastq
74
tagAlign
65
bigBed narrowPeak
12
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
1
csv
hdf5
1
hic
Organism
389
Homo sapiens
Biosample type
cell line
361
tissue
15
in vitro differentiated cells
13
primary cell
Organ
848
pancreas
682
connective tissue
490
adipose tissue
443
epithelium
389
liver
335
kidney
327
heart
267
brain
168
vasculature
162
blood vessel
159
bone element
122
limb
96
musculature of body
75
artery
61
eye
43
nerve
29
embryo
24
spleen
22
vein
20
lung
18
ureter
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
389
AMP
Genome assembly (visualization)
294
hg19
263
GRCh38
Lab
349
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
inconsistent ontology term
Audit category:
1
inconsistent control read length
biosample_type!
cell line
files.file_type!
hdf5
month_released!
August, 2022
October, 2017
BIOSAMPLE
ASSAY
389 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
small RNA-seq
RRBS
Hi-C
pCHi-C
single cell RNA-seq
tissue
liver
167
145
20
2
3
1
1
1
1
1
right lobe of liver
3
10
1
2
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
5
4
1
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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