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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
175
total RNA-seq
100
ChIP-seq
22
ATAC-seq
6
DNase-seq
4
WGBS
3
small RNA-seq
2
Hi-C
2
RRBS
1
pCHi-C
1
single cell RNA-seq
Assay category
179
Transcription
100
DNA binding
28
DNA accessibility
6
DNA methylation
2
3D chromatin structure
Target of assay
41
transcription factor
38
histone modification
37
histone
21
broad histone mark
21
control
16
narrow histone mark
4
RNA binding protein
3
chromatin remodeller
Date released
143
May, 2020
63
December, 2017
40
May, 2022
34
August, 2017
10
July, 2019
7
November, 2018
7
October, 2019
5
December, 2019
3
March, 2020
2
June, 2019
1
February, 2020
1
February, 2021
Available data
315
bam
290
bigWig
159
tsv
133
bed narrowPeak
98
fastq
tagAlign
65
bigBed narrowPeak
12
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
316
Homo sapiens
Biosample type
cell line
291
tissue
15
in vitro differentiated cells
10
primary cell
Organ
835
pancreas
661
connective tissue
482
adipose tissue
438
epithelium
335
kidney
327
heart
316
liver
170
vasculature
168
brain
164
blood vessel
159
bone element
122
limb
81
musculature of body
75
artery
eye
43
nerve
29
embryo
25
spleen
22
vein
19
lung
18
ureter
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
316
AMP
Genome assembly (visualization)
265
hg19
241
GRCh38
Lab
276
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
inconsistent ontology term
Audit category:
1
inconsistent control read length
biosample_type!
cell line
files.file_type!
tagAlign
organ_slims!
eye
BIOSAMPLE
ASSAY
316 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
small RNA-seq
Hi-C
RRBS
pCHi-C
single cell RNA-seq
tissue
liver
167
75
20
2
3
1
1
1
1
1
right lobe of liver
3
10
1
2
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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