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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
194
ChIP-seq
24
total RNA-seq
21
ATAC-seq
4
DNase-seq
4
pCHi-C
3
Hi-C
Assay category
194
DNA binding
25
DNA accessibility
24
Transcription
3
3D chromatin structure
Target of assay
167
histone
167
histone modification
128
narrow histone mark
39
broad histone mark
27
control
Date released
613
February, 2021
382
August, 2017
373
May, 2021
340
May, 2020
271
August, 2021
250
October, 2019
198
June, 2019
148
February, 2023
135
July, 2018
120
May, 2022
115
May, 2019
95
July, 2019
85
November, 2017
80
April, 2019
75
December, 2017
74
October, 2018
52
March, 2020
47
September, 2023
45
November, 2019
40
May, 2024
40
September, 2020
39
February, 2018
27
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
16
April, 2018
16
January, 2021
15
May, 2023
12
September, 2018
10
November, 2020
7
December, 2018
7
January, 2018
7
January, 2019
6
September, 2017
5
March, 2019
4
December, 2019
3
March, 2023
2
June, 2018
1
August, 2018
1
August, 2022
Available data
191
bam
164
bigWig
154
bed narrowPeak
49
bigBed narrowPeak
49
tagAlign
10
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
3
bedpe bed3+
3
hic
tagAlign bed3+
Organism
250
Homo sapiens
Biosample type
241
tissue
cell line
8
in vitro differentiated cells
1
primary cell
Organ
85
brain
69
limb
47
blood vessel
47
vasculature
42
nerve
epithelium
26
artery
21
eye
21
vein
15
kidney
8
heart
7
liver
4
connective tissue
4
gonad
4
ovary
3
pancreas
2
pituitary gland
1
adipose tissue
1
lymph node
1
skin of body
Project
250
AMP
Genome assembly (visualization)
171
hg19
165
GRCh38
Lab
250
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
biosample_type!
cell line
files.file_type!
tagAlign bed3+
organ_slims!
epithelium
BIOSAMPLE
ASSAY
250 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
pCHi-C
Hi-C
tissue
islet of Langerhans
21
14
13
4
tibial nerve
35
4
1
2
tibial artery
23
1
2
heart
5
2
1
brain
5
1
+ See 78 more…
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
1
1
1
cardiomyocytes (cardiac muscle cell)
1
1
1
adipocyte
2
primary cell
Heart fetal (cardiac muscle cell)
1
See all biosamples
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