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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
175
total RNA-seq
174
ChIP-seq
22
ATAC-seq
10
single cell RNA-seq
10
snATAC-seq
6
DNase-seq
4
WGBS
3
small RNA-seq
2
Hi-C
2
RRBS
2
pCHi-C
Assay category
188
Transcription
174
DNA binding
38
DNA accessibility
6
DNA methylation
2
3D chromatin structure
Target of assay
85
histone modification
84
histone
51
narrow histone mark
48
control
41
transcription factor
33
broad histone mark
4
RNA binding protein
3
chromatin remodeller
Date released
193
May, 2020
63
December, 2017
54
August, 2017
40
May, 2022
19
April, 2020
10
July, 2019
7
November, 2018
7
October, 2019
5
December, 2019
4
August, 2021
4
March, 2020
2
June, 2019
1
February, 2020
1
February, 2021
Available data
315
bam
290
bigWig
160
tsv
133
bed narrowPeak
98
fastq
74
tagAlign
65
bigBed narrowPeak
12
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
409
Homo sapiens
Biosample type
cell line
381
tissue
15
in vitro differentiated cells
14
primary cell
Organ
854
pancreas
684
connective tissue
491
adipose tissue
444
epithelium
390
liver
335
kidney
327
heart
286
brain
169
vasculature
163
blood vessel
159
bone element
122
limb
96
musculature of body
75
artery
61
eye
43
nerve
29
embryo
25
spleen
21
vein
20
lung
18
ureter
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
391
AMP
19
LungMap
Genome assembly (visualization)
295
hg19
263
GRCh38
Lab
351
AMP-T2D consortium
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
Audit category:
1
inconsistent control read length
biosample_type!
cell line
files.file_type!
tar
BIOSAMPLE
ASSAY
410 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
DNase-seq
WGBS
small RNA-seq
Hi-C
RRBS
pCHi-C
tissue
liver
167
145
20
1
2
3
1
1
1
1
lung
9
10
1
right lobe of liver
3
10
1
2
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
5
4
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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