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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
90
ChIP-seq
22
ATAC-seq
20
total RNA-seq
10
single cell RNA-seq
10
snATAC-seq
6
DNase-seq
4
WGBS
2
Hi-C
2
RRBS
Assay category
90
DNA binding
38
DNA accessibility
30
Transcription
6
DNA methylation
2
3D chromatin structure
Target of assay
85
histone modification
histone
51
narrow histone mark
48
control
41
transcription factor
33
broad histone mark
4
RNA binding protein
3
chromatin remodeller
Date released
46
December, 2017
40
May, 2022
23
May, 2020
22
August, 2017
19
April, 2020
7
November, 2018
3
July, 2019
2
June, 2019
1
August, 2021
1
February, 2021
1
March, 2020
1
October, 2019
Available data
251
bam
226
bigWig
tsv
69
bed narrowPeak
69
fastq
43
bigBed narrowPeak
27
tagAlign
9
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
165
Homo sapiens
Biosample type
cell line
157
tissue
6
primary cell
3
in vitro differentiated cells
Organ
339
pancreas
287
kidney
243
epithelium
147
liver
128
connective tissue
114
heart
101
bone element
83
vasculature
78
blood vessel
73
brain
66
limb
58
adipose tissue
54
musculature of body
53
eye
49
artery
19
lung
18
spleen
18
ureter
16
skeleton
14
nerve
11
embryo
8
blood
8
bodily fluid
7
vein
1
bone marrow
1
pericardium
1
pituitary gland
1
skin of body
1
thymus
Project
147
AMP
19
LungMap
Genome assembly (visualization)
74
hg19
50
GRCh38
Lab
107
AMP-T2D consortium
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
biosample_type!
cell line
files.file_type!
tsv
target.investigated_as!
histone
BIOSAMPLE
ASSAY
166 results
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ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
DNase-seq
WGBS
Hi-C
RRBS
tissue
liver
81
20
20
1
2
3
1
1
lung
9
10
right lobe of liver
5
1
2
1
primary cell
hepatocyte
1
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
in vitro differentiated cells
hepatocyte
3
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