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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
DNase-seq
76
ATAC-seq
51
single cell RNA-seq
42
ChIP-seq
6
snATAC-seq
3
snDrop-seq
2
RNA microarray
2
total RNA-seq
1
Hi-C
Assay category
162
DNA accessibility
53
Transcription
42
DNA binding
1
3D chromatin structure
Target of assay
30
histone
30
histone modification
15
broad histone mark
15
narrow histone mark
9
control
3
RNA binding protein
3
transcription factor
Date released
81
June, 2019
71
August, 2021
47
September, 2023
23
April, 2019
16
October, 2019
14
May, 2023
July, 2019
5
May, 2019
3
December, 2019
3
February, 2021
Available data
174
bed narrowPeak
122
bam
112
bigWig
102
bigBed narrowPeak
78
bed bed3+
78
bed broadPeak
78
bigBed broadPeak
64
xls
txt
12
tsv
5
csv
1
hic
Organism
263
Homo sapiens
Biosample type
234
tissue
29
primary cell
cell line
Organ
842
pancreas
666
connective tissue
479
adipose tissue
432
epithelium
380
liver
302
heart
268
brain
262
kidney
158
vasculature
153
blood vessel
117
limb
85
musculature of body
72
artery
71
bone element
60
eye
43
nerve
29
embryo
25
spleen
22
vein
20
lung
18
ureter
12
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
216
AMP
47
KPMP
Genome assembly (visualization)
187
GRCh38
106
hg19
Lab
131
AMP-T2D consortium
85
Katalin Susztak, Upenn
47
KPMP
Audit category:
7
inconsistent ontology term
2
audit script error
biosample_type!
cell line
files.file_type!
txt
month_released!
July, 2019
BIOSAMPLE
ASSAY
263 results
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DNase-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
snDrop-seq
RNA microarray
total RNA-seq
Hi-C
tissue
kidney
13
75
51
27
6
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
+ See 10 more…
primary cell
epithelial cell of proximal tubule
1
10
kidney epithelial cell
1
5
kidney tubule cell
3
1
kidney glomerular epithelial cell
2
1
glomerular visceral epithelial cell
2
+ See 3 more…
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