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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1178total RNA-seq
  • 1113ChIP-seq
  • 207DNase-seq
  • 165ATAC-seq
  • 106single cell RNA-seq
  • 18small RNA-seq
  • 17WGBS
  • 5FAIRE-seq
  • 1pCHi-C
Assay category
  • 1302Transcription
  • 1113DNA binding
  • 377DNA accessibility
  • 17DNA methylation
Target of assay
  • 750histone modification
  • 749histone
  • 388narrow histone mark
  • 360broad histone mark
  • 230control
  • 136transcription factor
  • 39RNA binding protein
  • 6chromatin remodeller
  • 3other context
  • 3other post-translational modification
Date released
  • 477February, 2021
  • 283May, 2020
  • 282August, 2017
  • 272May, 2021
  • 221October, 2019
  • 218June, 2019
  • 164July, 2018
  • 120May, 2019
  • 94December, 2017
  • 82July, 2019
  • 79April, 2019
  • 78November, 2017
  • 76October, 2018
  • 72September, 2018
  • 49April, 2018
  • 44November, 2019
  • 41August, 2021
  • 39February, 2018
  • 26November, 2018
  • 24May, 2022
  • 15October, 2017
  • 11March, 2020
  • 11September, 2017
  • 7December, 2018
  • 7January, 2019
  • 6November, 2020
  • 5December, 2019
  • 3August, 2018
  • 3June, 2018
  • 1March, 2019
Available data
  • 2810bam
  • 2647bigWig
  • 1481tsv
  • 1413bed narrowPeak
  • 931fastq
  • 687bigBed narrowPeak
  • 378tagAlign
  • 270bed bed3+
  • 263bed broadPeak
  • 226bigBed broadPeak
  • 160txt
  • 153zippedFastqFolder
  • 64xls
  • 35bed bedMethyl
  • 35bigBed bedMethyl
  • 21bedpe bed3+
  • 21hic
  • 11bed bed3
  • 8csv
  • 7bed bedgraph
  • 4hdf5
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tar
Organism
  • 2803Homo sapiens
Biosample type
  • 1907tissue
  • 609primary cell
  • cell line
  • 291in vitro differentiated cells
  • 3stem cell
Organ
  • 626pancreas
  • 593connective tissue
  • 442adipose tissue
  • 315liver
  • 266epithelium
  • 243brain
  • 145heart
  • 129kidney
  • 119vasculature
  • 114blood vessel
  • 114limb
  • 66bone element
  • 57musculature of body
  • 42nerve
  • 36artery
  • 28embryo
  • 24spleen
  • 20vein
  • 18ureter
  • 8skeleton
  • 7eye
  • 1pericardium
  • 1pituitary gland
Project
  • 2628AMP
  • 182T1D
Genome assembly (visualization)
  • 2496GRCh38
  • 2489hg19
Lab
  • 2605AMP-T2D consortium
  • 204Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 150inconsistent ontology term
  • 27inconsistent control
Audit category:
  • 75missing controlled_by
Audit category:
  • 30inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
biosample_type!
  • cell line
BIOSAMPLE
ASSAY

2810 results

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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
single cell RNA-seq
small RNA-seq
WGBS
FAIRE-seq
pCHi-C
tissue
adipose tissue38122
islet of Langerhans2663013861
liver14712221
bone tissue58
body of pancreas2354422
primary cell
monocyte538415
pancreatic beta cell1013712
pancreatic alpha cell1013612
pancreatic ductal cell413410
pancreatic acinar cell48512
in vitro differentiated cells
cardiomyocytes593
adipocyte4531
neural progenitor cell72010
pancreatic endoderm418
cardiac precursors (cardiac muscle cell)191
stem cell
hESC3
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