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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 203DNase-seq
  • 53ChIP-seq
  • 4ATAC-seq
  • 4Hi-C
  • 2Capture-C
  • 2total RNA-seq
  • 1pCHi-C
  • 1snATAC-seq
Assay category
  • 208DNA accessibility
  • 53DNA binding
  • 43D chromatin structure
  • 2Transcription
Target of assay
  • 25histone
  • 25histone modification
  • 19transcription factor
  • 13narrow histone mark
  • 12broad histone mark
  • 9control
  • 2RNA binding protein
Date released
  • 187June, 2019
  • 33August, 2017
  • 15December, 2017
  • 9November, 2018
  • 6October, 2019
  • 5August, 2021
  • 4February, 2023
  • 4July, 2019
  • 2May, 2021
  • 2September, 2017
  • 1February, 2021
  • 1May, 2022
  • 1November, 2020
Available data
  • 2810bam
  • 2647bigWig
  • 1481tsv
  • 1413bed narrowPeak
  • 931fastq
  • 687bigBed narrowPeak
  • 378tagAlign
  • 270bed bed3+
  • 263bed broadPeak
  • 226bigBed broadPeak
  • 160txt
  • 153zippedFastqFolder
  • 64xls
  • 35bed bedMethyl
  • 35bigBed bedMethyl
  • 21bedpe bed3+
  • 21hic
  • 11bed bed3
  • 8csv
  • 7bed bedgraph
  • 4hdf5
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1tar
Organism
  • 270Homo sapiens
Biosample type
  • 205tissue
  • 37primary cell
  • 25in vitro differentiated cells
  • cell line
  • 3stem cell
Organ
  • 78kidney
  • 36limb
  • 35brain
  • 34musculature of body
  • 30heart
  • 27connective tissue
  • 27pancreas
  • 21epithelium
  • 18ureter
  • 13vasculature
  • 12liver
  • 11blood vessel
  • 6adipose tissue
  • 4artery
  • 4eye
  • 3embryo
  • 2nerve
  • 2vein
  • 1spleen
Project
  • 270AMP
Genome assembly (visualization)
  • 256GRCh38
  • 247hg19
Lab
  • 266AMP-T2D consortium
  • 2Kyle Gaulton, UCSD
  • 2Struan F.A. Grant, CHOP
Audit category:
  • 6inconsistent ontology term
  • 1audit script error
Audit category:
  • 14missing controlled_by
Audit category:
  • 10inconsistent control read length
biosample_type!
  • cell line
BIOSAMPLE
ASSAY

270 results

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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
Hi-C
Capture-C
total RNA-seq
pCHi-C
snATAC-seq
tissue
islet of Langerhans21
heart18
muscle of arm17
brain14
kidney13
primary cell
hepatocyte13
cardiac fibroblast3
CD8-positive, alpha-beta T cell2
astrocyte of the cerebellum11
brain microvascular endothelial cell11
in vitro differentiated cells
adipocyte711
Posterior foregut3
definitive endodermal cell3
pancreatic endoderm3
primitive gut cell3
stem cell
hESC3
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